These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1197 fasta sequence [TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCATGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCCCGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCGCGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCGCCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGCTCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCGCCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGCTGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCGCCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGTTCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCGGGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGGACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGGCCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCGCCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGACCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATCAATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAGTATCAGTATTATATCTGCTGATTAATTTTACAGTGCATTGTTCTGTTCTGAAGATTACTGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAGTACAATCTACGGGCTGGTTTCAAAGCTTAGCCAAATGTATATATGTTGCCGGCTTGTGTTGTTGGCACGGGTTGTCAAGTTTGTCATGGTCGTACCTACCGTCAGACTGAGTACTCTTTTGCTGTATTATTGATATAATCCGTG] [+] EMBL AK070273 [TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCATGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCCCGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCGCGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCGCCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGCTCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCGCCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGCTGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCGCCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGTTCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCGGGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGGACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGGCCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCGCCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGACCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATCAATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAGTATCAGTATTATATCTGCTGATTAATTTTACAGTGCATTGTTCTGTTCTGAAGATTACTGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAGTACAATCTACGGGCTGGTTTCAAAGCTTAGCCAAATGTATATATGTTGCCGGCTTGTGTTGTTGGCACGGGTTGTCAAGTTTGTCATGGTCGTACCTACCGTCAGACTGAGTACTCTTTTGCTGTATTATTGATATAATCCGTG] consensusID : consensus_505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [CCTTGCTCTTGGCCTGCACATAGTATCAGTATTATATCTGTTGAATTAATTTTACAGTGCATTGTTCTGTTCTGAAAGATTACTGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAGTACAATCTACGGGGCTGGTTTCAAAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTGTGTTTGTTGGCACGGGGTTGTCAAATTTGTCATGGTCCGTACCTACCCGTCCAGACTGANTACTCTTTTGCCTGTATTAATTGAATATAAGGCCGTGT] [+] EMBL AA754611 [CCTTGCTCTTGGCCTGCACATAGTATCAGTATTATATCTGTTGAATTAATTTTACAGTGCATTGTTCTGTTCTGAAAGATTACTGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAGTACAATCTACGGGGCTGGTTTCAAAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTGTGTTTGTTGGCACGGGGTTGTCAAATTTGTCATGGTCCGTACCTACCCGTCCAGACTGANTACTCTTTTGCCTGTATTAATTGAATATAAGGCCGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_505#0 TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCA 60 consensus_505#1 ------------------------------------------------------------ consensus_505#0 TGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCC 120 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCG 180 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCG 240 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGC 300 consensus_505#1 ------------------------------------------------------------ consensus_505#0 TCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCG 360 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGC 420 consensus_505#1 ------------------------------------------------------------ consensus_505#0 TGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCG 480 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGT 540 consensus_505#1 ------------------------------------------------------------ consensus_505#0 TCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCG 600 consensus_505#1 ------------------------------------------------------------ consensus_505#0 GGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGG 660 consensus_505#1 ------------------------------------------------------------ consensus_505#0 ACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGG 720 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCG 780 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGA 840 consensus_505#1 ------------------------------------------------------------ consensus_505#0 CCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATC 900 consensus_505#1 ------------------------------------------------------------ consensus_505#0 AATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAG 960 consensus_505#1 ----------------------------------CCTTGCTCTTGGCC--TGC-ACATAG 23 ************ *** ****** consensus_505#0 TATCAGTATTATATCTGCTGA-TTAATTTTACAGTGCATTGTTCTGTTCTGAA-GATTAC 1018 consensus_505#1 TATCAGTATTATATCTGTTGAATTAATTTTACAGTGCATTGTTCTGTTCTGAAAGATTAC 83 ***************** *** ******************************* ****** consensus_505#0 TGG-ATGCTGCTAGTTTGTTTTGTTGATCTAGTGA-GTACAATCTACGGG-CTGGTTTCA 1075 consensus_505#1 TGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAGTACAATCTACGGGGCTGGTTTCA 143 *** ******************************* ************** ********* consensus_505#0 AA-GCTTAGCCAAATGT-ATATATGTT-GCCGGCTTGTGTT-GTTGGCACGGG-TTGTCA 1130 consensus_505#1 AAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTGTGTTTGTTGGCACGGGGTTGTCA 203 ** ***** ******** ********* ************* *********** ****** consensus_505#0 AGTTTGTCATGGTC-GTACCTACCG--TCAGACTGAGTACTCTTTTGC-TGTATTATT-- 1184 consensus_505#1 AATTTGTCATGGTCCGTACCTACCCGTCCAGACTGANTACTCTTTTGCCTGTATTAATTG 263 * ************ ********* ******** *********** ******* * consensus_505#0 GATATAAT-CCGTG- 1197 consensus_505#1 AATATAAGGCCGTGT 278 ****** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||