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Oryza sativa
cluster # 5057 cluster # 5057       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5057#0 length = 1566 sequences # 3  

consensusID : consensus_5057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1566
fasta sequence
                              [TCAAATCACCAAGTGATTCGAACCCATGGCGAGCATGAATGATCAACACGGCGGCGCCACCGCCCACGTCCTGCTCGTGCCGTTGCCGGCGCAGGGCCACATGAACCCGATGCTCCAGTTCGGCCGCCGCCTCGCCTACCACGGCCTCCGCCCCACCCTCGTCGCCACCCGCTACGTGCTCTCCACGAGCCCTCCTCCCGGCGACCCCTTCCGCGTCGCCGCCTTCTCCGACGGCTTCGACGCCGGCGGCATGGCCTCCTGCCCCGACCCCGTCGAGTACTGCCGCCGCCTCGAGGCCGTCGGGTCGGAGACGCTGGCGCGGGTCATCGACGCCGAGGCGCGCGTGGGGAGGGCCGCGACCGTGCTCGTCTACGACCCCCACATGGCGTGGGTGCCGCGCGTGGCGCGCGCCGCCGGCGTCCCCACGGCCGCGTTCCTGTCGCAGCCGTGCGCCGTGGACGCGATCTACGGCGAGGTGTGGGCCGGCCGCGTTCCGCTGCCGATGGACGACGGGGGCGACCTCCGGCGGCGCGGGGTGCTCAGCGTCGACCTCGCGACGGCGGACTTGCCGCCATTCGTGGCGGCGCCGGAGCTGTACCCGAAATACCTCGACGTCTCGATCCGGCAATTCGAGGACCTGCTCGACGCCGACGACGTGTTCGTCAACTCGTTCAACGACCTCGAGCCGATGGAGGCCGAGCACATGGAGTCGACATGGCGAGCCAAGACCGTCGGCCCGACGTTGCCGTCCTTCTTCCTCGACGACGGCCGGCTGCCGGCGAACAAGAACCACGGCATCGACATCTTCACCGGTGATGCGCCGTGCATGGAATGGCTGGATAAGCAGGCACCCTGCTCGGTTGTTCTTGCCTCCTATGGCACGGTCTACTCTCTCGACGGCGCCGAGCTCGAGGAGCTCGGCAATGGCCTCTGCAATTCCGGCAAGCCATTCC-TCTGGGTGGTGAGGTCGAGCGAGGGGCACAAGTTATCTGAAGAGCTTCGTGGAAAGTGCAAGGAGAAGGGGTTAATTGTGTCCTGGTGTCCCCAGCTTGAGGTCCTGAAACATAAGGCAACAGGTTGTTTCTTGACGCATTGTGGATGGAACTCGACGATGGAAGCAATTGCTACGGCGGTGCCAATGGTTGCGATGCCTCAGTCAGCGGACCAACCGACTATAGCGAAGTACGTGGAAACCGCATGGGAGATTGGTGTGAGGGCACAACTAGATGAGAAAGGCTCTGTCACGAAGGAGGAGGTGGAGATATCCATCAAGAAAGTGATGGATGGGAAGAGGGCAGTGGAGTACAAGAGGAATGCAGCTAAGT-GGATGCAAAAAGCCAAGGAAGCAGCACAAGTAGGCGGGAGCTCAGACAAGAACATTGCTGAATTTGTAGCAAAATATTTATCAAATTAGTATAGCTTTGTATACATCTGGTTTCTTCATGTAAGGATCTTGTAACACCAGCATGTAAAAAAAAATTAAATAGCAGACGACAAGATGGAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA]

[+] EMBL AK110892             [TCAAATCACCAAGTGATTCGAACCCATGGCGAGCATGAATGATCAACACGGCGGCGCCACCGCCCACGTCCTGCTCGTGCCGTTGCCGGCGCAGGGCCACATGAACCCGATGCTCCAGTTCGGCCGCCGCCTCGCCTACCACGGCCTCCGCCCCACCCTCGTCGCCACCCGCTACGTGCTCTCCACGAGCCCTCCTCCCGGCGACCCCTTCCGCGTCGCCGCCTTCTCCGACGGCTTCGACGCCGGCGGCATGGCCTCCTGCCCCGACCCCGTCGAGTACTGCCGCCGCCTCGAGGCCGTCGGGTCGGAGACGCTGGCGCGGGTCATCGACGCCGAGGCGCGCGTGGGGAGGGCCGCGACCGTGCTCGTCTACGACCCCCACATGGCGTGGGTGCCGCGCGTGGCGCGCGCCGCCGGCGTCCCCACGGCCGCGTTCCTGTCGCAGCCGTGCGCCGTGGACGCGATCTACGGCGAGGTGTGGGCCGGCCGCGTTCCGCTGCCGATGGACGACGGGGGCGACCTCCGGCGGCGCGGGGTGCTCAGCGTCGACCTCGCGACGGCGGACTTGCCGCCATTCGTGGCGGCGCCGGAGCTGTACCCGAAATACCTCGACGTCTCGATCCGGCAATTCGAGGACCTGCTCGACGCCGACGACGTGTTCGTCAACTCGTTCAACGACCTCGAGCCGATGGAGGCCGAGCACATGGAGTCGACATGGCGAGCCAAGACCGTCGGCCCGACGTTGCCGTCCTTCTTCCTCGACGACGGCCGGCTGCCGGCGAACAAGAACCACGGCATCGACATCTTCACCGGTGATGCGCCGTGCATGGAATGGCTGGATAAGCAGGCACCCTGCTCGGTTGTTCTTGCCTCCTATGGCACGGTCTACTCTCTCGACGGCGCCGAGCTCGAGGAGCTCGGCAATGGCCTCTGCAATTCCGGCAAGCCATTCC TCTGGGTGGTGAGGTCGAGCGAGGGGCACAAGTTATCTGAAGAGCTTCGTGGAAAGTGCAAGGAGAAGGGGTTAATTGTGTCCTGGTGTCCCCAGCTTGAGGTCCTGAAACATAAGGCAACAGGTTGTTTCTTGACGCATTGTGGATGGAACTCGACGATGGAAGCAATTGCTACGGCGGTGCCAATGGTTGCGATGCCTCAGTCAGCGGACCAACCGACTATAGCGAAGTACGTGGAAACCGCATGGGAGATTGGTGTGAGGGCACAACTAGATGAGAAAGGCTCTGTCACGAAGGAGGAGGTGGAGATATCCATCAAGAAAGTGATGGATGGGAAGAGGGCAGTGGAGTACAAGAGGAATGCAGCTAAGT GGATGCAAAAAGCCAAGGAAGCAGCACAAGTAGGCGGGAGCTCAGACAAGAACATTGCTGAATTTGTAGCAAAATATTTATCAAATTAGTATAGCTTTGTATACATCTGGTTTCTTCATGTAAGGATCTTGTAACACCAGCATGTAAAAAAAAATTAAATAGCAGACGACAAGATGG                                                                ]
[+] EMBL BI801893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   atTTCCTTCTGGGTGGTGA GTCGAGCGA GGGCACAAGTTATCTGAAGAGCTTCGTGGAAAGTGCAAGGAGAA GGGTTAATTGTGTCCTGGTGTCCCCAGCTTGAGGTCCTGAAACATAAGGCAACAGGTTGTTTCTTGACGCACTGTGGATGGAACTCGACTATGGAAGCAATTGCTACGGCGGTGCCAATGGTAGCGATGCCTCAGTCAGCGGACCAACCGACTATAGCGAAGTACGTGGAAACCGCATGGGAGATTGGTGTGAGGGCACAACTAGATGAGAAAGGCTTTGTCACGAAGGAGGAGGTGGAGATATCCATCAAGAAAGTGATGGATGGGAAGAGGGCAGTGGAGTACAAGAGGAATGCAGCTAAGTCGGATGC AAAAGCCAAGGAAGCAGCACAAGTAGGCGGGAGCTCAGACAAGAACATTGCTGAATTTGTAGC AAATATTTATCAAATTAGTATAGCTTTGTATACATCTGGTTTCTTCA GTAAGGATCTTGTAACACTAGTATGCAAAA                                                                                            ]
[+] EMBL CF318625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGCTAAGT GGATGCAAAAAGCCAAGGAAGCAGCACAAGTAGGCGGGAGCTCAGACAAGAACATTGCTGAATTTGTAGCAAAATATTTATCAAATTAGTATAGCTTTGTATACATCTGGTTTCTTCATGTAAGGATCTTGTAACACCAGCATGTAAAAAAAAATTAAATAGCAGACGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA]


>consensus_5057#0 TCAAATCACCAAGTGATTCGAACCCATGGCGAGCATGAATGATCAACACGGCGGCGCCAC CGCCCACGTCCTGCTCGTGCCGTTGCCGGCGCAGGGCCACATGAACCCGATGCTCCAGTT CGGCCGCCGCCTCGCCTACCACGGCCTCCGCCCCACCCTCGTCGCCACCCGCTACGTGCT CTCCACGAGCCCTCCTCCCGGCGACCCCTTCCGCGTCGCCGCCTTCTCCGACGGCTTCGA CGCCGGCGGCATGGCCTCCTGCCCCGACCCCGTCGAGTACTGCCGCCGCCTCGAGGCCGT CGGGTCGGAGACGCTGGCGCGGGTCATCGACGCCGAGGCGCGCGTGGGGAGGGCCGCGAC CGTGCTCGTCTACGACCCCCACATGGCGTGGGTGCCGCGCGTGGCGCGCGCCGCCGGCGT CCCCACGGCCGCGTTCCTGTCGCAGCCGTGCGCCGTGGACGCGATCTACGGCGAGGTGTG GGCCGGCCGCGTTCCGCTGCCGATGGACGACGGGGGCGACCTCCGGCGGCGCGGGGTGCT CAGCGTCGACCTCGCGACGGCGGACTTGCCGCCATTCGTGGCGGCGCCGGAGCTGTACCC GAAATACCTCGACGTCTCGATCCGGCAATTCGAGGACCTGCTCGACGCCGACGACGTGTT CGTCAACTCGTTCAACGACCTCGAGCCGATGGAGGCCGAGCACATGGAGTCGACATGGCG AGCCAAGACCGTCGGCCCGACGTTGCCGTCCTTCTTCCTCGACGACGGCCGGCTGCCGGC GAACAAGAACCACGGCATCGACATCTTCACCGGTGATGCGCCGTGCATGGAATGGCTGGA TAAGCAGGCACCCTGCTCGGTTGTTCTTGCCTCCTATGGCACGGTCTACTCTCTCGACGG CGCCGAGCTCGAGGAGCTCGGCAATGGCCTCTGCAATTCCGGCAAGCCATTCCTCTGGGT GGTGAGGTCGAGCGAGGGGCACAAGTTATCTGAAGAGCTTCGTGGAAAGTGCAAGGAGAA GGGGTTAATTGTGTCCTGGTGTCCCCAGCTTGAGGTCCTGAAACATAAGGCAACAGGTTG TTTCTTGACGCATTGTGGATGGAACTCGACGATGGAAGCAATTGCTACGGCGGTGCCAAT GGTTGCGATGCCTCAGTCAGCGGACCAACCGACTATAGCGAAGTACGTGGAAACCGCATG GGAGATTGGTGTGAGGGCACAACTAGATGAGAAAGGCTCTGTCACGAAGGAGGAGGTGGA GATATCCATCAAGAAAGTGATGGATGGGAAGAGGGCAGTGGAGTACAAGAGGAATGCAGC TAAGTGGATGCAAAAAGCCAAGGAAGCAGCACAAGTAGGCGGGAGCTCAGACAAGAACAT TGCTGAATTTGTAGCAAAATATTTATCAAATTAGTATAGCTTTGTATACATCTGGTTTCT TCATGTAAGGATCTTGTAACACCAGCATGTAAAAAAAAATTAAATAGCAGACGACAAGAT GGAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA AAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)