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Oryza sativa
cluster # 5058 cluster # 5058       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5058#0 length = 1317 sequences # 1  
consensus_5058#1 length = 317 sequences # 2  

consensusID : consensus_5058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1317
fasta sequence
                              [ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGTGACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAAGGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGCCGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTGGAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGTGATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGCCGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTTCGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAGCAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCGGACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTACACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGCGTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCCGGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGGCGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT]

[+] EMBL AK105791             [ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGTGACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAAGGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGCCGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTGGAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGTGATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGCCGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTTCGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAGCAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCGGACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTACACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGCGTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCCGGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGGCGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT]


>consensus_5058#0 ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGT GACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAA GGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGC CGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTG GAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGT GATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGC CGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTT CGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAG CAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCG GACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTA CACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGC GTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCC GGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGC CAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGA GGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGG CGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGA GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCT GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC GAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA TCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGT GATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT



consensusID : consensus_5058#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 317
fasta sequence
                              [NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA]

[+] EMBL AU032681             [NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA]
[+] EMBL AU032689             [                                                                                                     CCTGTTCAGATCGACCTGCAGGCGGCNGCNTAGCAGCNTAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAANTTTTACAAAGCACATTGCATNATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA]


>consensus_5058#1 NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTC AGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGC AGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGC TGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTAT AGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNA TTTTTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5058#0      ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGT 60
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAA 120
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGC 180
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTG 240
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGT 300
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGC 360
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTT 420
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAG 480
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCG 540
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTA 600
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGC 660
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCC 720
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGC 780
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGA 840
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      GGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGG 900
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      CGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGA 960
consensus_5058#1      -------------------------------NTGTGCAAGGCGTTCGCGATCGTCGAGGA 29
                                                      ****************************

consensus_5058#0      GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCT 1020
consensus_5058#1      GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTC-TCGGAGACGACAGCNT 88
                      ******************************************* ***********    *

consensus_5058#0      GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC 1080
consensus_5058#1      GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC 148
                      ************************************************************

consensus_5058#0      TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC 1140
consensus_5058#1      TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC 208
                      ************************************************************

consensus_5058#0      GAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA 1200
consensus_5058#1      GAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA 268
                      *** ********************************************************

consensus_5058#0      TCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGT 1260
consensus_5058#1      TCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA----------- 317
                      ****************************** *******         **           

consensus_5058#0      GATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT 1317
consensus_5058#1      ---------------------------------------------------------
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)