These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1317 fasta sequence [ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGTGACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAAGGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGCCGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTGGAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGTGATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGCCGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTTCGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAGCAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCGGACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTACACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGCGTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCCGGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGGCGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT] [+] EMBL AK105791 [ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGTGACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAAGGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGCCGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTGGAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGTGATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGCCGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTTCGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAGCAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCGGACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTACACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGCGTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCCGGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGGCGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT] consensusID : consensus_5058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence [NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA] [+] EMBL AU032681 [NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA] [+] EMBL AU032689 [ CCTGTTCAGATCGACCTGCAGGCGGCNGCNTAGCAGCNTAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAANTTTTACAAAGCACATTGCATNATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5058#0 ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGT 60 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAA 120 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGC 180 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTG 240 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGT 300 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGC 360 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTT 420 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAG 480 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCG 540 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTA 600 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGC 660 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCC 720 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGC 780 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGA 840 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 GGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGG 900 consensus_5058#1 ------------------------------------------------------------ consensus_5058#0 CGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGA 960 consensus_5058#1 -------------------------------NTGTGCAAGGCGTTCGCGATCGTCGAGGA 29 **************************** consensus_5058#0 GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCT 1020 consensus_5058#1 GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTC-TCGGAGACGACAGCNT 88 ******************************************* *********** * consensus_5058#0 GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC 1080 consensus_5058#1 GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC 148 ************************************************************ consensus_5058#0 TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC 1140 consensus_5058#1 TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC 208 ************************************************************ consensus_5058#0 GAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA 1200 consensus_5058#1 GAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA 268 *** ******************************************************** consensus_5058#0 TCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGT 1260 consensus_5058#1 TCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA----------- 317 ****************************** ******* ** consensus_5058#0 GATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT 1317 consensus_5058#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||