cluster # 506

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Oryza sativa
cluster # 506 cluster # 506 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_506#0 length = 830 sequences # 1

consensus_506#1 length = 586 sequences # 1

consensusID : consensus_506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 830
fasta sequence

                              [GTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGACAAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAATCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGCTGGAAAAGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCAACGATAAAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATAAACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACAAATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACAGAGATTGAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT]

[+] EMBL CB630708             [GTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGACAAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAATCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGCTGGAAAAGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCAACGATAAAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATAAACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACAAATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACAGAGATTGAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT]




>consensus_506#0
GTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTT
TTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCA
GAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTG
GGGCAGGCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAG
CTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAG
ATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAAT
GAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTG
CTGGACAAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGAT
GTTAAATCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGC
TGGAAAAGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCA
ACGATAAAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTC
AAGATAAACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGG
GCCACAAATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACA
GAGATTGAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT

consensusID : consensus_506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGTCAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAACTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTTCCCCTTGTCT]

[+] EMBL CA759676             [TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGTCAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAACTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTTCCCCTTGTCT]




>consensus_506#1
TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGT
CAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAA
CTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTC
CCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCATTTCTTTTCTCTCCCAGACA
ATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATAC
TCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCAT
CGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTT
GAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGC
CGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGG
GTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTTCCCCTTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_506#0      ------------------------------------------------------------
consensus_506#1      TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGT 60
                                                                                 

consensus_506#0      ------------------------------------------------------------
consensus_506#1      CAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAA 120
                                                                                 

consensus_506#0      ------------------------------------------------------GTCCTC 6
consensus_506#1      CTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTC 180
                                                                           ******

consensus_506#0      CCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTTTTCTCT 66
consensus_506#1      CCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTC--------TCATTTCTTTTCTCT 232
                     *************************************        ***************

consensus_506#0      CCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTG 126
consensus_506#1      CCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTG 292
                     ************************************************************

consensus_506#0      CTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAG 186
consensus_506#1      CTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAG 352
                     ************************************************************

consensus_506#0      GCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGC 246
consensus_506#1      GCGGCCATCGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGC 412
                     ********** *** *********************************************

consensus_506#0      TCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAGATGAGG 306
consensus_506#1      TCCTGGTTGAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGG 472
                     ****************************** ** **************************

consensus_506#0      AACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCG 366
consensus_506#1      AACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCG 532
                     ************************************************************

consensus_506#0      ATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGAC 426
consensus_506#1      ATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTT---CCCCTTGTCT--- 586
                     *********************************  ** ** *        * **      

consensus_506#0      AAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAA 486
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      TCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGCTGGAAA 546
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      AGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCAACGATA 606
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      AAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATA 666
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      AACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACA 726
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      AATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACAGAGATT 786
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      GAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT 830
consensus_506#1      --------------------------------------------