These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1042 fasta sequence [CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATCCAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGCAGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGGAGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGGCGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCACTCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCTCTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATGGCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGGGGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACAGTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCTGATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCATGCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCTTAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCAAAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTAAGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAGAGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAG] [+] EMBL AK071524 [CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATCCAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGCAGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGGAGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGGCGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCACTCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCTCTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATGGCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGGGGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACAGTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCTGATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCATGCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCTTAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCAAAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTAAGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAGAGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAG] consensusID : consensus_5060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [GACACTGACATGGACTGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCTAAAAAAGGGGAAATTCCGGGCCCTAAAAAAA] [+] EMBL CF321354 [GACACTGACATGGACTGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCTAAAAAAGGGGAAATTCCGGGCCCTAAAAAAA] consensusID : consensus_5060#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 95 fasta sequence [TTTTTTTTTTTTTCACATGAAACCTCACCCTTCCTTTATGACAGTGACCTGTCTGTCTCTGTCCAAAAGCTTCATACCCCCTTGTCTCGTCCTCT] [+] EMBL CA760439 [TTTTTTTTTTTTTCACATGAAACCTCACCCTTCCTTTATGACAGTGACCTGTCTGTCTCTGTCCAAAAGCTTCATACCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5060#0 CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATC 60 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 CAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGC 120 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 AGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGG 180 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 AGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGG 240 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 CGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCAC 300 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 TCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCT 360 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 CTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATG 420 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 GCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGG 480 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 GGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACA 540 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 GTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCT 600 consensus_5060#1 -----------GACACTGACATGGACTGA--GGAGTCCTATAATTAAGCTCTTACTTTTT 47 consensus_5060#2 ------------------------------------------------TTTTTTTTTTTT 12 * * * consensus_5060#0 GATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCAT 660 consensus_5060#1 CAGTTTGATGTTCCTTTGCTCATGTAT-GAAGCTTT--TGGACAGAGACAGACAGGTCAC 104 consensus_5060#2 TCACATGAAACCTCACCCTTCCTTTATGACAGTGACC-TGTCTGTCTCTGTCCAAAAGCT 71 *** * * ** ** ** ** consensus_5060#0 GCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCT 720 consensus_5060#1 ---TGTCATAATGGAAGGCTG-AGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAA 160 consensus_5060#2 TCATACCCCCTTGTCTCGTCCTCT------------------------------------ 95 * ** * consensus_5060#0 TAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCA 780 consensus_5060#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 220 consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 AAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTA 840 consensus_5060#1 AAAAAAAACCCCTTTTTTCCCCTTAC----CTAAAAAAGGGGAAATTCCG---GGCCCTA 273 consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 AGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAG 900 consensus_5060#1 AAAAAA------------------------------------------------------ 279 consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 AGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTAC 960 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 TTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTC 1020 consensus_5060#1 ------------------------------------------------------------ consensus_5060#2 ------------------------------------------------------------ consensus_5060#0 ACTGTCATAATGGAAGGCTGAG 1042 consensus_5060#1 ---------------------- consensus_5060#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||