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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1467 fasta sequence
[CACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACCCCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTGGTCGGAAATTGGTAAGGTTTTTGTCATGAAATTACCAATCTTAATTGAATTGGTTAGTTTTCAGTAGTTTGAATTTAGTCTTGAAGCTTAACAGCTAAAGTAGGAAACTCAACCTCTAAATGATAAATGATACTGTTCATATTGATATTTGCAAACATTCAAGTACTGTGAATTTTATTACCTCAAGGTGTTACTGTGAATTTTCCAATCAATATGACACGGTGGTTCAAAAATTGCAGATTAAATCAAATCATTAATTTCATGCTACTATGATATGATCTCATATTAATTTTGTTACCTCAATGTGTTACCGTAATGGAGTAGAACTGCATTAGAAATTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTAGAATTTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTCAGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACA]
[+] EMBL AK105405 [CACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACCCCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTGGTCGGAAATTGGTAAGGTTTTTGTCATGAAATTACCAATCTTAATTGAATTGGTTAGTTTTCAGTAGTTTGAATTTAGTCTTGAAGCTTAACAGCTAAAGTAGGAAACTCAACCTCTAAATGATAAATGATACTGTTCATATTGATATTTGCAAACATTCAAGTACTGTGAATTTTATTACCTCAAGGTGTTACTGTGAATTTTCCAATCAATATGACACGGTGGTTCAAAAATTGCAGATTAAATCAAATCATTAATTTCATGCTACTATGATATGATCTCATATTAATTTTGTTACCTCAATGTGTTACCGTAATGGAGTAGAACTGCATTAGAAATTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTAGAATTTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTCAGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACA]
consensusID : consensus_5063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1311 fasta sequence
[CAACCAGATCCACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACACCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCAT-GTTTTCACCGCCGCTGGTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACAGAAGAAAAGGAAAACGGAGGACTTGTGGTTTGTGGCCTTGTGGGCTTGTGGTGCACCTGGACTTGTGGGTTAGGCTTTATGGGCTTGTCGCTTGGACCCGGGCTTGCTTGTGGGCCTGTGGACAGATGTGGCCTACTGGGCAATGATCACACACAAAAGCGCGTACGGACGAAAAATCGGATCTGTGTAAACTGCGCGTACGGACGACAAATTGGTGGCGAAAGGAAAAATCCAAATCTTTTAGTTAGTTAAG]
[+] EMBL AK102171 [CAACCAGATCCACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACACCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCAT GTTTTCACCGCCGCTGGTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGG ]
[+] EMBL CA765111 [ aaggggGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCNTCGGAGGTTGTCTCGAAAGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATNGTTTTCACCGCCGCTGGTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTACTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCACTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACAGAAGAAAAGGAAAACGGAGGACTTGTGGTTTGTGGCCTTGTGGGCTTGTGGTGCACCTGGACTTGTGGGTTAGGCTTTATGGGCTTGTCGCTTGGACCCGGGCTTGCTTGTGGGCCTGTGGACAGATGTGGCCTACTGGGCAATGATCACACACAAAAGCGCGTACGGACGAAAAATCGGATCTGTGTAAACTGCGCGTACGGACGACAAATTGGTGGCGAAAGGAAAAATCCAAATCTTTTAGTTAGTTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5063#0 ----------CACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTC 50
consensus_5063#1 CAACCAGATCCACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTC 60
**************************************************
consensus_5063#0 CGTATTGAGACGGATTCACCCCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTC 110
consensus_5063#1 CGTATTGAGACGGATTCACACCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTC 120
******************* ****************************************
consensus_5063#0 GCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTG 170
consensus_5063#1 GCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTG 180
************************************************************
consensus_5063#0 CACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCA 230
consensus_5063#1 CACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCA 240
************************************************************
consensus_5063#0 CTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCC 290
consensus_5063#1 CTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCC 300
************************************************************
consensus_5063#0 TCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACG 350
consensus_5063#1 TCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACG 360
************************************************************
consensus_5063#0 ACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGT 410
consensus_5063#1 ACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGT 420
************************************************************
consensus_5063#0 GCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATA 470
consensus_5063#1 GCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATA 480
************************************************************
consensus_5063#0 GCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCAT 530
consensus_5063#1 GCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCAT 540
************************************************************
consensus_5063#0 CACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAG 590
consensus_5063#1 CACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAG 600
************************************************************
consensus_5063#0 ACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCT 650
consensus_5063#1 ACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCT 660
************************************************************
consensus_5063#0 TCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGG 710
consensus_5063#1 TCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGG 720
************************************************************
consensus_5063#0 ATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGA 770
consensus_5063#1 ATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGA 780
************************************************************
consensus_5063#0 AATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTG 830
consensus_5063#1 AATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTG 840
************************************************************
consensus_5063#0 GTCGGAAATTGGTAAGGTTTTTGTCATGAAATTACCA-ATCTTAATTGAATTGGTTAGTT 889
consensus_5063#1 GTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGC 900
************ *** * ** * * *** * **
consensus_5063#0 TTCAGTAGTTTGAATTTAGTCTTGAAGCTTAACAGCTAAAGTAGGAAACTCAACCTCTAA 949
consensus_5063#1 CTC-GTGATTTGTATTT----TTGTATTTT-----CTTGTGT-GTTTCTATTATTTCTAT 949
** ** **** **** *** * ** ** ** * * ****
consensus_5063#0 ATGATAAATGATACTGTTCATATTGATATTTGCAAACATTCAAGTACTGTGAATTTTATT 1009
consensus_5063#1 ATGT---ATG-TCTTGCCTGTGATTGTATTCGTGTA-----------TGTGTATTTTTCC 994
*** *** * ** * * **** * * **** *****
consensus_5063#0 ACCTCAAGGTGTTACTGTGAATTTTCCAATCAATATGACACGGTGGTTCAAAAATTGCAG 1069
consensus_5063#1 CCTGCGAGAGAAATCTGTAAA-------ATCGTGTTAGTGTGAGCGCTAAAAAATAGCGG 1047
* * ** **** ** *** * * * * ****** ** *
consensus_5063#0 ATTAAATCAAATCATTAATTTCATGCTACTATGATATGATCTCATATTAATTTTGTTACC 1129
consensus_5063#1 TAGAAATAACAGAAGAAAAGGAAAACGGAGGACTTGTGGTTTG----TGGCCTTGTGGGC 1103
**** * * * ** * * * ** * * * **** *
consensus_5063#0 TCAATGTGTTACCGTAATGGAGTAGAACTGCATTAGAAATTCTTGAGTTATATATAAACC 1189
consensus_5063#1 TTGTGGTGCACCTGGACTTGTGGGTTAG-GCTTTATGGGCTTGTCGCTTGGACCCGGGCT 1162
* *** * * * * * * * ** *** * * ** * *
consensus_5063#0 TA---ATGGAATTGTAACTGCATTAGAATTTCTTGAGTTATATATAAACCTAATGGAATT 1246
consensus_5063#1 TGCTTGTGGGCCTGTGGACAGAT-GTGGCCTACTGGGCAATGATCACACACAA---AAGC 1218
* *** *** ** * ** * ** * ** ** **
consensus_5063#0 GTAACTGCATTCAGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAG 1306
consensus_5063#1 GCGTACGGACGAAAAATCGGATCTGTGTAAACTGCGCGTACGGACGACAAATTGGTGGCG 1278
* * * * * * * * * * * ** * * *
consensus_5063#0 AGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGT 1366
consensus_5063#1 AAAGGAAAAATCCAAATCTTT-TAGTTAGTTAAG-------------------------- 1311
* ** ** *** ** ** ** *
consensus_5063#0 CTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAAT 1426
consensus_5063#1 ------------------------------------------------------------
consensus_5063#0 CGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACA 1467
consensus_5063#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||