These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGGAATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTCGATGTGCAAAGCAAACCATTTGCTGATTGGGAAACATTGCCTGATGAATGGAATTGCCTTGAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGCAAATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTACATTGATAAAAA] [+] EMBL BI798915 [AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGGAATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTCGATGTGCAAAGCAAACCATTTGCTGATTGGGAAACATTGCCTGATGAATGGAATTGCCTTGAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGCAAATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTACATTGATAAAAA] consensusID : consensus_5067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence [TTTTTATCAATTGCTAGAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAGCAATTGATAAAAAA] [-] EMBL AU172329 [TTTTTATCAATTGCTAGAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAA ] [+] EMBL BI796832 [ GCTGTGTATGAATCACTCACCTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAGCAATTGATAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5067#0 AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGG 60 consensus_5067#1 ------TTTTTATCAATTGCT-AGAACCTT-CGATAAAAGAAAGGGATG-CTGTGTATG- 50 * * * * *** ******** ****************** ********* consensus_5067#0 AATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTC 120 consensus_5067#1 AATCACTCACCTATT-CTTCCGAATTATACGTATCCGCGCGATTAATTTTTG---GTTTC 106 *************** ******************************* **** ***** consensus_5067#0 GATGTGCAAA-GCAAACCATTTGCTGATTGGGAAACATTGCC-TGATGAATGGAATTGCC 178 consensus_5067#1 GATGTGCAAAAGCAAACCATTTCT--ATTGG-AAACATTCCTATAATGAAT-------TC 156 ********** *********** ***** ******* * * ****** * consensus_5067#0 TTGAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGC 238 consensus_5067#1 CTTAGGAACCTTTATAATAAATGGAATATA---------CCGAATTG--TGAT-CAAT-C 203 * *** * * * * ** **** *** ******** *** **** * consensus_5067#0 AAATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTT 298 consensus_5067#1 AAATATT--GCTAAGT-CCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTT 260 **** * ******* ******************************************* consensus_5067#0 CTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAC--ATTGATA 356 consensus_5067#1 CTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAGCAATTGATA 320 ************************************************** ******* consensus_5067#0 AAAA- 360 consensus_5067#1 AAAAA 325 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||