cluster # 5068

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Oryza sativa
cluster # 5068 cluster # 5068 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5068#0 length = 1909 sequences # 2

consensus_5068#1 length = 326 sequences # 1

consensusID : consensus_5068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1909
fasta sequence

                              [TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGGCCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACCTCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCCTGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAATCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGTCCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGGGATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTCGGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACGAAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCGACGCCGTCGGTGACAAAGGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCTGCCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGAGGAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGCAAGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCGCCGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGGGGGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCGGCGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTCGCCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGATAACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTGTGGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGGGGTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGGTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGCCAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCCCAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGGGTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGCCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTATCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATGGCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCATTTGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG]

[-] EMBL C99712               [TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGGCCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACCTCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCCTGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAATCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGTCCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGGGATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTCGGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACGAAGGAGGGGATAGAGGACTAGCTCCATCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK066585             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGACTCCTACTCCGTTCTCGGACTCCCAGCCCGCTGCCACCTTTGCGCCGCTGTCGCCGACCAAGTCTGCCGCT GACGAAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCGACGCCGTCGGTGACAAAGGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCTGCCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGAGGAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGCAAGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCGCCGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGGGGGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCGGCGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTCGCCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGATAACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTGTGGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGGGGTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGGTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGCCAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCCCAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGGGTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGCCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTATCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATGGCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCATTTGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG]




>consensus_5068#0
TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTT
TTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGG
CCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACC
TCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCC
TGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAA
TCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGT
CCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGG
GATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTC
GGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACG
AAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCG
ACGCCGTCGGTGACAAAGGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGAG
ACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCC
ACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCTG
CCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCG
CTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGAG
GAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGCA
AGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCGC
CGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGGG
GGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCGG
CGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTCG
CCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGAT
AACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTGT
GGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGGG
GTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGG
TCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGCC
AAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCCC
AAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGG
GTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGC
CGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTAT
CTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATGG
CTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCATT
TGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG

consensusID : consensus_5068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCTGCCTTGCCGACNTGCACTGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTCAGTCCCCTTCCTCCTCAGTCCCCTCTCT]

[-] EMBL C73934               [CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCTGCCTTGCCGACNTGCACTGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTCAGTCCCCTTCCTCCTCAGTCCCCTCTCT]




>consensus_5068#1
CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGAG
ACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCC
ACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCTG
CCTTGCCGACNTGCACTGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGC
TCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTCAG
TCCCCTTCCTCCTCAGTCCCCTCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5068#0      TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTT 60
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGG 120
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACC 180
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCC 240
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAA 300
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGT 360
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGG 420
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTC 480
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACG 540
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      AAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCG 600
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      ACGCCGTCGGTGACAAA-GGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGA 659
consensus_5068#1      -CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGA 59
                       ********** ***** * ************     *** *******************

consensus_5068#0      GACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCC 719
consensus_5068#1      GACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCC 119
                      ************************************************************

consensus_5068#0      CACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCT 779
consensus_5068#1      CACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCT 179
                      ***************************************  *    **************

consensus_5068#0      GCCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTC 839
consensus_5068#1      GCCTTGCCGACNTGCACTGG-CGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTC 238
                      ***********   ****** ***************************************

consensus_5068#0      GCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGA 899
consensus_5068#1      GCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTC 298
                      **************************************************   *      

consensus_5068#0      GGAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGC 959
consensus_5068#1      AGTCCCCTTCCTCCTCAGTCCCCTCTCT-------------------------------- 326
                       *   **** *  *  *  *  *   *                                 

consensus_5068#0      AAGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCG 1019
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CCGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGG 1079
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GGGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCG 1139
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GCGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTC 1199
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GCCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGA 1259
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TAACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTG 1319
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TGGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGG 1379
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GGTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTG 1439
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGC 1499
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCC 1559
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTG 1619
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GGTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAG 1679
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTA 1739
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATG 1799
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCAT 1859
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TTGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG 1909
consensus_5068#1      --------------------------------------------------