cluster # 5070

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Oryza sativa
cluster # 5070 cluster # 5070 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5070#0 length = 826 sequences # 2

consensus_5070#1 length = 723 sequences # 1

consensusID : consensus_5070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 826
fasta sequence

                              [TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCCTCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTTCGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATATTAAATATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTATTGTTTATCTGGCCCCTTTCTGTTAGTCTTATGGAGAGTGTTATTCCTTTACTGTTGACAATTTCAGCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA]

[+] EMBL AK064618             [TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCCTCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTTCGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATATTAAATATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTATTGTTTATCTGGCCCCTTTCTGTTAGTCTTATGGAGAGTGTTATTCCTTTACTGTTGACAATTTCAGCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA]
[+] EMBL CF335590             [                        CCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCCTCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTTCGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCC                                                                                                                                                                                      ]




>consensus_5070#0
TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCC
TCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTT
CGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACA
AGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGA
TAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGA
AGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGG
TGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGG
TGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCC
GCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGT
GAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACT
ACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATATTAAAT
ATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTATTGTTT
ATCTGGCCCCTTTCTGTTAGTCTTATGGAGAGTGTTATTCCTTTACTGTTGACAATTTCA
GCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA

consensusID : consensus_5070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence

                              [TCTCACCAACCCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGGGATATCGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTCGAAGATGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAACTGCATAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCGGCGCAACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAATCCATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACAGGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACGTCTCTCGCACTGCATTCCCTGGAAATAGGCCTGTTAAGAAGGAGGGGCTAGCGAGTATTCTTTAAAACAAACCTCCCCAAGTCTTGTTACAATCACGTCTGAATGAAACTGGTATTGTTGCCTTCAGCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTAATACTATGTAATTCTGTTTGGAAAGCTGTGGAAGAGAAACACCTAGTTACATGTGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACCTTGATAAATATAACAGAATG]

[+] EMBL AK062985             [TCTCACCAACCCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGGGATATCGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTCGAAGATGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAACTGCATAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCGGCGCAACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAATCCATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACAGGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACGTCTCTCGCACTGCATTCCCTGGAAATAGGCCTGTTAAGAAGGAGGGGCTAGCGAGTATTCTTTAAAACAAACCTCCCCAAGTCTTGTTACAATCACGTCTGAATGAAACTGGTATTGTTGCCTTCAGCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTAATACTATGTAATTCTGTTTGGAAAGCTGTGGAAGAGAAACACCTAGTTACATGTGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACCTTGATAAATATAACAGAATG]




>consensus_5070#1
TCTCACCAACCCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGG
GATATCGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTC
GAAGATGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAA
CTGCATAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCG
GCGCAACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACG
AATCCATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACT
CAACAGGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGT
CGACGTCTCTCGCACTGCATTCCCTGGAAATAGGCCTGTTAAGAAGGAGGGGCTAGCGAG
TATTCTTTAAAACAAACCTCCCCAAGTCTTGTTACAATCACGTCTGAATGAAACTGGTAT
TGTTGCCTTCAGCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTAATAC
TATGTAATTCTGTTTGGAAAGCTGTGGAAGAGAAACACCTAGTTACATGTGTTCTTCTTA
CCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACCTTGATAAATATAACAGA
ATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5070#0      TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCC 60
consensus_5070#1      --------------------------------------------------TCTCACCAAC 10
                                                                         **  **  *

consensus_5070#0      TCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTT 120
consensus_5070#1      CCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGGGATA-----T 65
                       *** ** ******    **    *** *  ***    *  *** * **   *      *

consensus_5070#0      CGACGGTCGGGAAGGGA------GAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAA 174
consensus_5070#1      CGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTCGAAGA 125
                      ** *** * *****         ******     ** *  *   * *    * * *** *

consensus_5070#0      TGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCA 234
consensus_5070#1      TGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAACTGCA 185
                      ********** ** ***** ***** ***** ***** ** ** ***** ***** ****

consensus_5070#0      TAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATA 294
consensus_5070#1      TAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCGGCGCA 245
                      ******* ** *********** ******** ******** ** ********* * *  *

consensus_5070#0      ACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGC 354
consensus_5070#1      ACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAATCC 305
                      ************* ***** ** ******** ***** ****************** * *

consensus_5070#0      ATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACC 414
consensus_5070#1      ATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACA 365
                      **************** ***************************** ***** ****** 

consensus_5070#0      GGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATG 474
consensus_5070#1      GGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACG 425
                      ******* ** ******** ** *********** *********** ** ***** ** *

consensus_5070#0      TATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCA 534
consensus_5070#1      TCTCTCGCACTGCATTCCCTGGAAATAGG---CCTGTTAAGAAGGAGGGGCTAGCGAGTA 482
                      * ** **** ****** ** ** ** ***   ******** ******** *****    *

consensus_5070#0      TCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAA 594
consensus_5070#1      TTCTTTAAAACAAACCTCCCCAAGT-CTTGTTACAATCACGTCTG--AATGAAACTGGTA 539
                      * ** * ***  *   *   **    *    * ** *** *   *    ** *****  *

consensus_5070#0      GTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATA 654
consensus_5070#1      -TTGTTGCCTTCA--GCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTA 596
                       **  * *  * *  * **     *  * ***  *****        *     *  * **

consensus_5070#0      TTAAATATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTA 714
consensus_5070#1      ATA-----CTATGTAATTCTGTTTGGAAAGCTGTGGAAGAG-AAACACCTAGTTACATG- 649
                       **      ***** *** *** **     ** ** *  ** ***** *** ** ***  

consensus_5070#0      TTGTTTATCTGGCCCCTTTCTGTTAGTCTTAT--GGAGAGTGTTATTCCTTTACTGTTGA 772
consensus_5070#1      -TGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACC-TTGA 707
                       ****  ***  **  **  **** ** ** *  *** * ***  *   *****  ****

consensus_5070#0      CAATTTCAGCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA 826
consensus_5070#1      TAAATATAACAG-AATG------------------------------------- 723
                       ** *  * **  * *