These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1506 fasta sequence [TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGGACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT] [-] EMBL AK111388 [TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGGACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAG ] [+] EMBL AK109717 [ ACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT] consensusID : consensus_5072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATCGAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTTGTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANAANNNNNNANN] [+] EMBL CA756722 [TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATCGAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTTGTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANAANNNNNNANN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5072#0 TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGG 60 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 ACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTC 120 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 TTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGG 180 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGC 240 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCC 300 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGG 360 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGG 420 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 GAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGC 480 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGC 540 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGT 600 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCG 660 consensus_5072#1 ---------------------------------TGGCCACCACGCTCGCTGGTCCCGCCG 27 *************************** consensus_5072#0 AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCC 720 consensus_5072#1 AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCC 87 ************************************** ********************* consensus_5072#0 GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA 780 consensus_5072#1 GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA 147 ************************************************************ consensus_5072#0 GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC 840 consensus_5072#1 GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC 207 ************************************************************ consensus_5072#0 GGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG 900 consensus_5072#1 GGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG 267 ***************** ****************************************** consensus_5072#0 CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTC--CGGTGCTTGAGT 958 consensus_5072#1 CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGT 327 ********************************************** ************ consensus_5072#0 GCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTAT 1018 consensus_5072#1 GCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTAT 387 ************************************************************ consensus_5072#0 GGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTC 1078 consensus_5072#1 GGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTAC 447 ***************************************** ************ *** * consensus_5072#0 TACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACT 1138 consensus_5072#1 CACGCTGAGTCAGCTGTCATGTTGGAT---------------AAAATCGAAGTCAAAAAC 492 ********* * * ** ** ** *** * * ** consensus_5072#0 CGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACC 1198 consensus_5072#1 CAACAAGAAATTTAGTTTGCACTGGT-------TTTATAAGTTGAGGGATGCGTTGTATC 545 * * * ** ** ** * *** ** * * *** * consensus_5072#0 CCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCC 1258 consensus_5072#1 CGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANA 605 * * *** * * * ** * ** * * ** ** ** consensus_5072#0 ACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGA 1318 consensus_5072#1 ANNNNNNANN-------------------------------------------------- 615 * consensus_5072#0 AAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCAT 1378 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 GGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAAC 1438 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 ATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATT 1498 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 CGTAGTAT 1506 consensus_5072#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||