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Oryza sativa
cluster # 5072 cluster # 5072       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5072#0 length = 1506 sequences # 2  
consensus_5072#1 length = 615 sequences # 1  

consensusID : consensus_5072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1506
fasta sequence
                              [TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGGACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT]

[-] EMBL AK111388             [TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGGACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK109717             [                                                                           ACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT]


>consensus_5072#0 TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGG ACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTC TTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGG CAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGC CACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCC CGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGG CGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGG GAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGC CGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGC CCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGT CCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCG AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCC GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC GGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGC TTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGG AGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTA CGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCG ATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCC ACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCAC ATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAA ATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGG GCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACAT AAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCG TAGTAT



consensusID : consensus_5072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence
                              [TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATCGAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTTGTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANAANNNNNNANN]

[+] EMBL CA756722             [TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATCGAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTTGTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANAANNNNNNANN]


>consensus_5072#1 TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACA ACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGT CCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGG GGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACC ACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGG CTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGT CTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAG GCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATC GAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTT GTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAA AAANAANNNNNNANN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5072#0      TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGG 60
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      ACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTC 120
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      TTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGG 180
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGC 240
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCC 300
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGG 360
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGG 420
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      GAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGC 480
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGC 540
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGT 600
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCG 660
consensus_5072#1      ---------------------------------TGGCCACCACGCTCGCTGGTCCCGCCG 27
                                                       ***************************

consensus_5072#0      AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCC 720
consensus_5072#1      AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCC 87
                      ************************************** *********************

consensus_5072#0      GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA 780
consensus_5072#1      GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA 147
                      ************************************************************

consensus_5072#0      GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC 840
consensus_5072#1      GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC 207
                      ************************************************************

consensus_5072#0      GGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG 900
consensus_5072#1      GGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG 267
                      ***************** ******************************************

consensus_5072#0      CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTC--CGGTGCTTGAGT 958
consensus_5072#1      CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGT 327
                      **********************************************  ************

consensus_5072#0      GCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTAT 1018
consensus_5072#1      GCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTAT 387
                      ************************************************************

consensus_5072#0      GGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTC 1078
consensus_5072#1      GGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTAC 447
                      ***************************************** ************ *** *

consensus_5072#0      TACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACT 1138
consensus_5072#1      CACGCTGAGTCAGCTGTCATGTTGGAT---------------AAAATCGAAGTCAAAAAC 492
                       *********     *    * ** **               **   ***  * * **  

consensus_5072#0      CGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACC 1198
consensus_5072#1      CAACAAGAAATTTAGTTTGCACTGGT-------TTTATAAGTTGAGGGATGCGTTGTATC 545
                      * *  * ** ** **    *   ***       **   *            *   *** *

consensus_5072#0      CCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCC 1258
consensus_5072#1      CGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANA 605
                      *    * ***   *  *  *   ** *  **   *  *    **    **    **    

consensus_5072#0      ACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGA 1318
consensus_5072#1      ANNNNNNANN-------------------------------------------------- 615
                      *                                                           

consensus_5072#0      AAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCAT 1378
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      GGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAAC 1438
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      ATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATT 1498
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      CGTAGTAT 1506
consensus_5072#1      --------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)