These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence [CTCTGACCGCGAGCAGCCATGGAGTTATCCATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGTTCAACAAGCAGTGTTCATACCGAATCACCCGTAAAGCTTGCAGTGTTCTTGGGGCAGTATCTCCGATACAATGTACAGAAACCAGCACAGAGTCTTTAGTATCTTTCAAAGATTTTCTTGTGTCTGTGCAAACTGAAGAGGATGGACTGATAAAGCTACGAGTAACTGTAGCTGATACAATGACAGAATCTATCTTTGAGAAAGTTTTCTCAAAGAATGTTGCTGCTGCACAACCACTTCCTGGCTTTCGACGAATGAAAGGAGGGAAAACTCGAGATATACCAAAAGAGATTGCTCTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGACCTCGATGCATCAAGAAATCTGAAGGTTCTACAGACCTATGAGGAGCTTGAAGCAGCATTCGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGACTCGGGATTTAGATAGCCATTAGAGATGACCCCTGCAACCAAAGGGGCTTCCAGTTCCAGCTGATGATTAATAGCACAACCTACAGATAAACTTATTATCTAGACAATGATGCATACGAACACTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCTGGCTATCTGTATTCTTGTAAAAACAACATGTTTTTAGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCACCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAAGAGGA] [+] EMBL AK103734 [CTCTGACCGCGAGCAGCCATGGAGTTATCCATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGTTCAACAAGCAGTGTTCATACCGAATCACCCGTAAAGCTTGCAGTGTTCTTGGGGCAGTATCTCCGATACAATGTACAGAAACCAGCACAGAGTCTTTAGTATCTTTCAAAGATTTTCTTGTGTCTGTGCAAACTGAAGAGGATGGACTGATAAAGCTACGAGTAACTGTAGCTGATACAATGACAGAATCTATCTTTGAGAAAGTTTTCTCAAAGAATGTTGCTGCTGCACAACCACTTCCTGGCTTTCGACGAATGAAAGGAGGGAAAACTCGAGATATACCAAAAGAGATTGCTCTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGACCTCGATGCATCAAGAAATCTGAAGGTTCTACAGACCTATGAGGAGCTTGAAGCAGCATTCGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGACTCGGGATTTAGATAGCCATTAGAGATGACCCCTGCAACCAAAGGGGCTTCCAGTTCCAGCTGATGATTAATAGCACAACCTACAGATAAACTTATTATCTAGACAATGATGCATACGAACACTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCTGGCTATCTGTATTCTTGTAAAAACAACATGTTTTTAGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCACCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAAGAGGA] consensusID : consensus_5073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [ATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGGTGACCTGCTCCCTTTCTCTCTTCTCTTCTGGGTGCCGGTGCGCACCGAAGAAACGGCGGATTCTGTGGCATCCTCTGGGTTGTTTCATGAGAAGAAATGAGGAAAACTTGTGCGGTTTCAGTATATGGTTTTGTCTTGGAAGTTCTGCGATGATTTGGCTGTTGTTGTTGGATGTTTCTTGCCATTCTCTGCAGAAAATATCAGGGCATTTCTTTTGCTCGCACCCGTGGATAAAATTGGGTTCAGTGTTTGTTATTATCCTGAATAAAATAACATCGATTTTCCTTTTCAAGATACATTTCTGCTAGTACCTTATTGCATTTTGTCCTCTATAATTTTGTAGATTGAATGCCTCAGTTAGTCAGTTTAACTGTTCAGTCTGTACCCTTTCTGCACCAAAGTGCATCCAAAACCCTCTATTGTTTGCAGGAAGCTAGTAGAGTTGTTGTACCATGTTTACTATATATCCTGTTCTCATGCGTCCTTTTCTTTTGGCAAATTATTCTAAGATTACTGTAAGTATTGTTGAAAGGTATTTGTGGGGTAATATGCTTTTATTTCTGTGGCATTACACGGCATATATACAGAGTATGAGTTAAGAAAACATTATCGGGATGGTGTTCAGTAGCTGAGCAACTTGTTTGTTCCTTTTGTTCGCAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGT] [+] EMBL CB649171 [ATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGGTGACCTGCTCCCTTTCTCTCTTCTCTTCTGGGTGCCGGTGCGCACCGAAGAAACGGCGGATTCTGTGGCATCCTCTGGGTTGTTTCATGAGAAGAAATGAGGAAAACTTGTGCGGTTTCAGTATATGGTTTTGTCTTGGAAGTTCTGCGATGATTTGGCTGTTGTTGTTGGATGTTTCTTGCCATTCTCTGCAGAAAATATCAGGGCATTTCTTTTGCTCGCACCCGTGGATAAAATTGGGTTCAGTGTTTGTTATTATCCTGAATAAAATAACATCGATTTTCCTTTTCAAGATACATTTCTGCTAGTACCTTATTGCATTTTGTCCTCTATAATTTTGTAGATTGAATGCCTCAGTTAGTCAGTTTAACTGTTCAGTCTGTACCCTTTCTGCACCAAAGTGCATCCAAAACCCTCTATTGTTTGCAGGAAGCTAGTAGAGTTGTTGTACCATGTTTACTATATATCCTGTTCTCATGCGTCCTTTTCTTTTGGCAAATTATTCTAAGATTACTGTAAGTATTGTTGAAAGGTATTTGTGGGGTAATATGCTTTTATTTCTGTGGCATTACACGGCATATATACAGAGTATGAGTTAAGAAAACATTATCGGGATGGTGTTCAGTAGCTGAGCAACTTGTTTGTTCCTTTTGTTCGCAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGT] consensusID : consensus_5073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence [TCGAGATGTAAGTTCTTATTTTGACTTGTAAAAAGTATGTGACTATTCGAAGAACTGCATCCACTTCATGTATGCAAATGCATTCGAACTTTACGGGAAAAATGCATATATTGTTTTTACTTACATTACATTCATTGGTGGTGCTGATTGCTGAAGATACCAAAAGAGATTGCTTTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGCCCTCGATGCATCAAAAAATCTGAAGGTTTTACAGCCCTATGAGGAGCTTGAAGCAGCATTGGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGATTGGGGATTTAGATAGCCATTAGAGATGCCCCCTGCAACCAAAGGGGTTTCCAGTTCCAGCTGATGATTAATAGCCCACCCTACAGATAAACTTATTATTTAGACAATGATGCATACGAACCCTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCGGGCTATCTGTATTTTTGTAAAAACAACATGTTTTTGGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCCCCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAGGAGGAACTTTTTTCCAAAAAAAAAAAAAAAAAAATAAAAAGA] [-] EMBL CB649172 [TCGAGATGTAAGTTCTTATTTTGACTTGTAAAAAGTATGTGACTATTCGAAGAACTGCATCCACTTCATGTATGCAAATGCATTCGAACTTTACGGGAAAAATGCATATATTGTTTTTACTTACATTACATTCATTGGTGGTGCTGATTGCTGAAGATACCAAAAGAGATTGCTTTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGCCCTCGATGCATCAAAAAATCTGAAGGTTTTACAGCCCTATGAGGAGCTTGAAGCAGCATTGGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGATTGGGGATTTAGATAGCCATTAGAGATGCCCCCTGCAACCAAAGGGGTTTCCAGTTCCAGCTGATGATTAATAGCCCACCCTACAGATAAACTTATTATTTAGACAATGATGCATACGAACCCTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCGGGCTATCTGTATTTTTGTAAAAACAACATGTTTTTGGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCCCCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAGGAGGAACTTTTTTCCAAAAAAAAAAAAAAAAAAATAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5073#0 CTCTGACCGCGAGCAGCCATGGAGTTATCCATTGCGCCTGCGGCGATGGCGATGGCGATG 60 consensus_5073#2 ------------------------------------------------------------ consensus_5073#1 ------------------------------ATTGCGCCTGCGGCGATGGCGATGGCGATG 30 consensus_5073#0 GGCCTCCTCGCGAAGAACCCCAAGATGATCAATCACAGATATGCCAGTGACATGCAACTG 120 consensus_5073#2 ------------------------------------------------------------ consensus_5073#1 GGCCTCCTCGCGAAGAACCCCAAGGTGACCT----------------------------- 61 consensus_5073#0 CAGCATCGCCTATCTCCAGCTTGTTCGGTGATGTTCAACAAGCAGTGTTCATACCGAATC 180 consensus_5073#2 ------------------------------------------------------------ consensus_5073#1 --GCTCCCTTTCTCTCTTCTCTTCTGGGTGCCG-------------GTGCGCACCGAAGA 106 consensus_5073#0 ACCCGTAAAGCTTGCAGTGTTCTTGGGGCAGTATCTCCGATACAATGTACAGAAACCAGC 240 consensus_5073#2 ------------------------------------------------------------ consensus_5073#1 AACGGCGGATTCTGTGGCATCCTCTGGGTTGTTTCATGAGAAGAAATGAGGAAAACTTGT 166 consensus_5073#0 ACAGAGTCTTTAGTATCTTTCAAAGATTTTCTTGTGTCTGTGCAAACTGAAGAGGATGGA 300 consensus_5073#2 -------------------TCGAGATGTAAGTTCTTATTTTGACTTGTAAAAAGTATG-- 39 consensus_5073#1 GCGGTTTCAGTATATGGTTTTGTCTTGGAAGTTCTGCGATGATTTGGCTGTTGTTGTTGG 226 * ** * * consensus_5073#0 CTGATAAAGCTACGAGTAACTGTAGCTGATACAATGACAGAATCTATCTTTGAGAAAGTT 360 consensus_5073#2 -TGACTA---TTCGAAGAACTGCATCCACTTCATGTATGCAAA-TGCATTCGA---ACTT 91 consensus_5073#1 ATGTTTC--TTGCCATTCTCTGCAGAAAATATCAGGGCATTTCTTTTGCTCGC---ACCC 281 ** * * * *** * * * * * * consensus_5073#0 TTCTCAAAGAATGTTGCTGCTGCACAACCACTTCCTGGCTTTCGACGAATGAAAGGAGGG 420 consensus_5073#2 TACGGGAAAAATGCA-----TATATTGTTTTTACTTACATTACATTCATTGGTGGTGCTG 146 consensus_5073#1 GTGGATAAAATTGGGTTCAGTGT-TTGTTATTATCCTGAATAAAATAACATCGATTTTCC 340 ** * ** * * * * consensus_5073#0 AAAACTCGAGATATACCAAAAGAGATTGCTCTGCACTTAATTGGGCCATCAAAGGTGAAG 480 consensus_5073#2 ATTGCTGAAGATA--CCAAAAGAGATTGCTTTGCACTTAATTGGGCCATCAAAGGTGAAG 204 consensus_5073#1 TTTTCAAGATACATTTCTGCTAGTACCTTATTGCATTTTGTCC--TCTATAATTTTGTAG 398 * * * * * * **** ** * * ** ** ** consensus_5073#0 AAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGAC 540 consensus_5073#2 AAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGCC 264 consensus_5073#1 ATTGAATGCCTCAGTTA----GTCAGTTT---AACTGTTCAGTCTGTACCCTTTCTGCAC 451 * *** * *** * **** * ** ** * * *** * * * consensus_5073#0 CTCGATGCATCAAGAAATCTGAAGGTTCTACAGACCTATGAGGAGCTTGAAGCAGCATTC 600 consensus_5073#2 CTCGATGCATCAAAAAATCTGAAGGTTTTACAGCCCTATGAGGAGCTTGAAGCAGCATTG 324 consensus_5073#1 CAAAGTGCATCCAAAACCCTCTATTGTTTGCAGGAAGCTAGTAGAGTTGTTGTACCATGT 511 * ****** * ** ** * * * *** * *** * * *** consensus_5073#0 GAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTT 660 consensus_5073#2 GAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTT 384 consensus_5073#1 TTACT-----ATATATCCTGTTCTCATGCGTCCTTTTCTTT-TGGCAAATTATT----CT 561 ** * * ** * * **** * *** *** * * *** * * consensus_5073#0 AAGGACTCGGGATTTAGATAGCCATTAGAGATGACCCCTGCAACCAAAGGGGCTTCCAGT 720 consensus_5073#2 AAGGATTGGGGATTTAGATAGCCATTAGAGATGCCCCCTGCAACCAAAGGGGTTTCCAGT 444 consensus_5073#1 AAGATTACTG----TAAGTATTGTTGAAAGGTA---TTTGTGGGGTAATATGCTTTTATT 614 *** * ** ** * * ** * ** ** * ** * * consensus_5073#0 TCCAGCTGATGATTAATAGCACAACCTACAGATAAACTTATTATCTAGACAATGATGCAT 780 consensus_5073#2 TCCAGCTGATGATTAATAGCCCACCCTACAGATAAACTTATTATTTAGACAATGATGCAT 504 consensus_5073#1 TCT-----GTGGC--ATTACACGGCATATATACAGAGT-ATGAGTTAAGAAAACAT-TAT 665 ** ** ** * * * ** * * * * * ** * ** ** ** ** consensus_5073#0 ACGAACACTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCTGGCTATCTGTATTCTTGT 840 consensus_5073#2 ACGAACCCTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCGGGCTATCTGTATTTTTGT 564 consensus_5073#1 CGGGATGGTGTTCAGTAGCTGAGCAACTTGTTTGTTCCTTTTGTTCGCAGATGATCAATC 725 * * * * *** * * ** * * * * consensus_5073#0 AAAAACAACATGTTTTTAGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGT 900 consensus_5073#2 AAAAACAACATGTTTTTGGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGT 624 consensus_5073#1 ACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGT 785 * * * * * * * ** * * * * ** *** consensus_5073#0 GCACCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAAGAGGA---- 956 consensus_5073#2 GCCCCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAGGAGGAACTT 684 consensus_5073#1 ------------------------------------------------------------ consensus_5073#0 --------------------------------- consensus_5073#2 TTTTCCAAAAAAAAAAAAAAAAAAATAAAAAGA 717 consensus_5073#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||