cluster # 5078

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Oryza sativa
cluster # 5078 cluster # 5078 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5078#0 length = 876 sequences # 2

consensus_5078#1 length = 279 sequences # 1

consensusID : consensus_5078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 876
fasta sequence

                              [CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACTTCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCTTTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGGTTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGGACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCGAGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGCCGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGGAGGCGCGCGCGATCGCCGG-CGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAGGTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGACGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAAAA]

[+] EMBL AK108327             [CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACTTCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCTTTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGGTTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGGACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCGAGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGCCGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGGAGGCGCGCGCGATCGCCGG CGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAGGTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGACGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAA       ]
[+] EMBL BI798916             [                                                                                                                                                                                                                                                                                                                        GCAA CTGAG  A CCGAA GC GCC GC GCGGTGGC C GT TC CCGGAGGGACAGAGC GCCGATTCTT GCGAAGGTCC GGCGGACTCGAT CC CGGCTGGAGGCGCGCGCGATCGCCGGTCGGCGAGGAGGA CGGCGC CCGCCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGC CCGCCGCGGAGGTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTACAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGACGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCC AATAATCGCATTCGTTTTTCATTAAAAAAAAAA]




>consensus_5078#0
CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACT
TCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCT
TTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGG
TTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGG
ACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCG
AGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGC
CGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGG
AGGCGCGCGCGATCGCCGGCGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGA
AGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAG
GTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGA
GCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGC
ACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGA
CGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCAT
GATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTG
CCAAATAATCGCATTCGTTTTTCATTAAAAAAAAAA

consensusID : consensus_5078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [NCTGNTGCTTGTGNANCGGTGNTTNNATGNTCNGCGAGCGCCGCGNTNATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGCACGGCACGGCAGAGCAGCGTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAA]

[+] EMBL AU069887             [NCTGNTGCTTGTGNANCGGTGNTTNNATGNTCNGCGAGCGCCGCGNTNATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGCACGGCACGGCAGAGCAGCGTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAA]




>consensus_5078#1
NCTGNTGCTTGTGNANCGGTGNTTNNATGNTCNGCGAGCGCCGCGNTNATAGACGGCTCG
GCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGC
ACGGCACGGCAGAGCAGCGTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGA
AGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACG
AGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5078#0      CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACT 60
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      TCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCT 120
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      TTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGG 180
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      TTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGG 240
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      ACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCG 300
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      AGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGC 360
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      CGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGG 420
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      AGGCGCGCGCGATCGCCGGCGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGA 480
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      AGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAG 540
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      GTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGA 600
consensus_5078#1      ----------------------------------------------NCTGNTGCTTGTGN 14
                                                                       *  *     * 

consensus_5078#0      GCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGC 660
consensus_5078#1      ANCGGTGNT---TNNATGNTCNGCGAGCGCCGCGNTN----ATAGACGGCTCGGCCCAGC 67
                        ** *  *   *    *  * **   *******       *******************

consensus_5078#0      ACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGA 720
consensus_5078#1      ACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGCACGGC-A 126
                      *******************************     ********************** *

consensus_5078#0      CGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCAT 780
consensus_5078#1      CGGCAGAGCAGCG-TAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCAT 185
                      ********* * * **********************************************

consensus_5078#0      GATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTG 840
consensus_5078#1      GATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTG 245
                      ************************************************************

consensus_5078#0      CCAAATAATCGCATTCGTTTTTCATTAAAAAAAAAA 876
consensus_5078#1      CCAAATAATCGCATTCGTTTTTCATTAAAAAAAA-- 279
                      **********************************