These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 237 fasta sequence [CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGGGGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA] [+] EMBL AU069893 [CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGGGGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA] [+] EMBL AU069892 [ AGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGGGGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA] consensusID : consensus_5080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCAAAAA] [+] EMBL BI797495 [ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5080#0 CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGG 60 consensus_5080#1 ------------------------------------------------------------ consensus_5080#0 GGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGG 120 consensus_5080#1 ---ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGG 57 ***************************************** *************** consensus_5080#0 CGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTG 180 consensus_5080#1 CGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTG 117 ************************************************************ consensus_5080#0 TACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA--- 237 consensus_5080#1 TACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCA 177 ******************************************* * * ** * consensus_5080#0 ---- consensus_5080#1 AAAA 181 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||