These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [CTGTTGATTTCGGAAGGAGATCCCACCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCATCCTTCTGGGTTTGGCAGATCTGGATGGTGCAAGTCACTACTTTGTCTTGGGGAAATGGGGAGCAAGCAGCTTCGAAACAGTAAAGCCATTGAATGATTCAACTTGCAATAGATCCTTCAGCTTCTCGTCACATATTATTTTCCTCCGGTCAGAAGGATCCTGTAATTTATTCTCTTTTATATAGTCCCACATTCTTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGCCAATGAATTTCACTAAATCAT-CCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTTTGCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAAAGAAGCTAATTATGTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGG-CTACCTAGGCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAGGTCCCATAACAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCTTGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCAAAGAGTGAAAATGGACAAGATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGCAGCAAAAGAAATGGGTGCTGT] [+] EMBL CB670250 [CTGTTGATTTCGGAAGGAGATCCCACCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCATCCTTCTGGGTTTGGCAGATCTGGATGGTGCAAGTCACTACTTTGTCTTGGGGAAATGGGGAGCAAGCAGCTTCGAAACAGTAAAGCCATTGAATGATTCAACTTGCAATAGATCCTTCAGCTTCTCGTCACATATTATTTTCCTCCGGTCAGAAGGATCCTGTAATTTATTCTCTTTTATATAGTCCCACATTCTTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGCCAATGAATTTCACTAAATCAT CCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTTTGCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAAAGAAGCTAATTATGTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGG CTACCTAGGCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAGGTCCCATAACAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCTTGTATTGATGAAGGCCTAT ] [-] EMBL CA766411 [ TCAGATCGCGAAAGCANACTCTCANCAGTGCCAATGAATTTCACTAAATCATNGNGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTNGGCTTCTTCCCTTCATTTCNTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCAGCAAAGAAGCTAATTATNTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGGNGGGGGTAGGCAATAAGCCCCANCTGGCCAGGAAATTAGAAAGCATTGAAGGCCCCATAANAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCTTGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCAAAGAGTGAAAATGGACAAGATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGCAGCAAAAGAAATGGGTGCTGT] consensusID : consensus_5085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTGGAAACAAAATTACCATCCTTCTGGGTGGGGAGATCTGGATGGTGGCAGTCCACTACTTGTCTTGGTGAAATGGGGAAGCAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACATAGATCCTTCAGGTTCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA] [-] EMBL BI810347 [TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTGGAAACAAAATTACCATCCTTCTGGGTGGGGAGATCTGGATGGTGGCAGTCCACTACTTGTCTTGGTGAAATGGGGAAGCAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACATAGATCCTTCAGGTTCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5085#0 ----------CTGTTG-ATTTCGGAAGGAGATCCCA---CCCACAAGTTAAAATTCCACA 46 consensus_5085#1 TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACA 60 ** ** ****************** ********************* consensus_5085#0 TTTCTCACATAGTTCCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCAT 106 consensus_5085#1 TTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTG-GAAACAAAATTACC-AT 118 **************** * ******************** ************* ** consensus_5085#0 CCTTCTGGGTTTGGCAGATCTGGATGGTGCAAGTC-ACTACTTTGTCTTGGGGAAATGGG 165 consensus_5085#1 CCTTCTGGGTG-GGGAGATCTGGATGGTGGCAGTCCACTACTT-GTCTTGGTGAAATGGG 176 ********** ** ************** **** ******* ******* ******** consensus_5085#0 GA-GCAAGCAGCTTCGAAACAGTAAAG-CCATTGAATGATTCAACTTGCAATAGATCCTT 223 consensus_5085#1 GAAGCAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACA-TAGATCCTT 235 ** ************************ ****** *********** ** ********* consensus_5085#0 CAGCTTCTCGTCACATATTATTTTCCTCCGG-TCAGAAGGATCCTGTAATTTATTCTCTT 282 consensus_5085#1 CAGGTTCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA--- 292 *** *************************** ************* * * * consensus_5085#0 TTATATAGTCCCACATTCTTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGC 342 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 CAATGAATTTCACTAAATCATCCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACC 402 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 CAGAAGAACCACCTTTTTGCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTT 462 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 TGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCA 522 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 GAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAA 582 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 AGAAGCTAATTATGTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAA 642 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 TGGCAGAGGGCTACCTAGGCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAG 702 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 GTCCCATAACAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACT 762 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 TATCAACAAATACATTCTTGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCA 822 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 AAGAGTGAAAATGGACAAGATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGC 882 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 AGCAAAAGAAATGGGTGCTGT 903 consensus_5085#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||