cluster # 5085

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Oryza sativa
cluster # 5085 cluster # 5085 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5085#0 length = 903 sequences # 2

consensus_5085#1 length = 292 sequences # 1

consensusID : consensus_5085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 903
fasta sequence

                              [CTGTTGATTTCGGAAGGAGATCCCACCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCATCCTTCTGGGTTTGGCAGATCTGGATGGTGCAAGTCACTACTTTGTCTTGGGGAAATGGGGAGCAAGCAGCTTCGAAACAGTAAAGCCATTGAATGATTCAACTTGCAATAGATCCTTCAGCTTCTCGTCACATATTATTTTCCTCCGGTCAGAAGGATCCTGTAATTTATTCTCTTTTATATAGTCCCACATTCTTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGCCAATGAATTTCACTAAATCAT-CCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTTTGCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAAAGAAGCTAATTATGTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGG-CTACCTAGGCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAGGTCCCATAACAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCTTGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCAAAGAGTGAAAATGGACAAGATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGCAGCAAAAGAAATGGGTGCTGT]

[+] EMBL CB670250             [CTGTTGATTTCGGAAGGAGATCCCACCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCATCCTTCTGGGTTTGGCAGATCTGGATGGTGCAAGTCACTACTTTGTCTTGGGGAAATGGGGAGCAAGCAGCTTCGAAACAGTAAAGCCATTGAATGATTCAACTTGCAATAGATCCTTCAGCTTCTCGTCACATATTATTTTCCTCCGGTCAGAAGGATCCTGTAATTTATTCTCTTTTATATAGTCCCACATTCTTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGCCAATGAATTTCACTAAATCAT CCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTTTGCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAAAGAAGCTAATTATGTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGG CTACCTAGGCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAGGTCCCATAACAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCTTGTATTGATGAAGGCCTAT                                                                                                        ]
[-] EMBL CA766411             [                                                                                                                                                                                                                                                                                                                       TCAGATCGCGAAAGCANACTCTCANCAGTGCCAATGAATTTCACTAAATCATNGNGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTNGGCTTCTTCCCTTCATTTCNTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCAGCAAAGAAGCTAATTATNTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGGNGGGGGTAGGCAATAAGCCCCANCTGGCCAGGAAATTAGAAAGCATTGAAGGCCCCATAANAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCTTGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCAAAGAGTGAAAATGGACAAGATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGCAGCAAAAGAAATGGGTGCTGT]




>consensus_5085#0
CTGTTGATTTCGGAAGGAGATCCCACCCACAAGTTAAAATTCCACATTTCTCACATAGTT
CCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCATCCTTCTGGGTTTGG
CAGATCTGGATGGTGCAAGTCACTACTTTGTCTTGGGGAAATGGGGAGCAAGCAGCTTCG
AAACAGTAAAGCCATTGAATGATTCAACTTGCAATAGATCCTTCAGCTTCTCGTCACATA
TTATTTTCCTCCGGTCAGAAGGATCCTGTAATTTATTCTCTTTTATATAGTCCCACATTC
TTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGCCAATGAATTTCACTAAAT
CATCCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACCCAGAAGAACCACCTTTTT
GCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTTTGGGTGTTGATCTCTCAG
GTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCAGAATACGTACTCAGAGCT
AGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAAAGAAGCTAATTATGTGGC
ATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAATGGCAGAGGGCTACCTAG
GCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAGGTCCCATAACAAGACATC
AATTAAGTACATAATTACAATTAGGTACATGAGTACATGACTTATCAACAAATACATTCT
TGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCAAAGAGTGAAAATGGACAA
GATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGCAGCAAAAGAAATGGGTGC
TGT

consensusID : consensus_5085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTGGAAACAAAATTACCATCCTTCTGGGTGGGGAGATCTGGATGGTGGCAGTCCACTACTTGTCTTGGTGAAATGGGGAAGCAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACATAGATCCTTCAGGTTCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA]

[-] EMBL BI810347             [TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACATTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTGGAAACAAAATTACCATCCTTCTGGGTGGGGAGATCTGGATGGTGGCAGTCCACTACTTGTCTTGGTGAAATGGGGAAGCAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACATAGATCCTTCAGGTTCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA]




>consensus_5085#1
TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACA
TTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTGGAAACAAAATTACCATCC
TTCTGGGTGGGGAGATCTGGATGGTGGCAGTCCACTACTTGTCTTGGTGAAATGGGGAAG
CAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACATAGATCCTTCAGGT
TCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5085#0      ----------CTGTTG-ATTTCGGAAGGAGATCCCA---CCCACAAGTTAAAATTCCACA 46
consensus_5085#1      TTTTAGGAACCTACTGGATTTCGGAAGGAGATCCCCACCCCCACAAGTTAAAATTCCACA 60
                                **  ** ******************    *********************

consensus_5085#0      TTTCTCACATAGTTCCCTAACAGTTTCATGTTACACATTCTGCAAAACAAAATTACCCAT 106
consensus_5085#1      TTTCTCACATAGTTCCTAACAGGTTTCATGTTACACATTCTG-GAAACAAAATTACC-AT 118
                      ****************  *   ********************  ************* **

consensus_5085#0      CCTTCTGGGTTTGGCAGATCTGGATGGTGCAAGTC-ACTACTTTGTCTTGGGGAAATGGG 165
consensus_5085#1      CCTTCTGGGTG-GGGAGATCTGGATGGTGGCAGTCCACTACTT-GTCTTGGTGAAATGGG 176
                      **********  ** **************  **** ******* ******* ********

consensus_5085#0      GA-GCAAGCAGCTTCGAAACAGTAAAG-CCATTGAATGATTCAACTTGCAATAGATCCTT 223
consensus_5085#1      GAAGCAAGCAGCTTCGAAACAGTAAAGGCCATTGGATGATTCAACTGACA-TAGATCCTT 235
                      ** ************************ ****** ***********  ** *********

consensus_5085#0      CAGCTTCTCGTCACATATTATTTTCCTCCGG-TCAGAAGGATCCTGTAATTTATTCTCTT 282
consensus_5085#1      CAGGTTCTCGTCACATATTATTTTCCTCCGGGTCAGAAGGATCCTTCCACGAAAACA--- 292
                      *** *************************** *************   *   *  *    

consensus_5085#0      TTATATAGTCCCACATTCTTTTCACAACATCAGATCGCGAAAGCATACTCTCACCAGTGC 342
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      CAATGAATTTCACTAAATCATCCGAAAGTTGAAGGGGCACAAGAAAACCAGATCCAGACC 402
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      CAGAAGAACCACCTTTTTGCTTCTTCCCTTCATTTCTTTCTCTCTTTTGAGGCTTCTCTT 462
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      TGGGTGTTGATCTCTCAGGTGAGGCAGAGGTCACAGGACCTGAAAAACCATAAGGTATCA 522
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      GAATACGTACTCAGAGCTAGATCTGGCAGAGTAGTACACTAGAGTTAGTTCAATCACCAA 582
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      AGAAGCTAATTATGTGGCATGGAACCACCGACACCATTTACTCCTTTTAAGAATGTTAAA 642
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      TGGCAGAGGGCTACCTAGGCAATAAGCACAAGCTGGCCAGGAAATTAGCAAGCATTGAAG 702
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      GTCCCATAACAAGACATCAATTAAGTACATAATTACAATTAGGTACATGAGTACATGACT 762
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      TATCAACAAATACATTCTTGTATTGATGAAGGCCTATACTGATCTTGACCACACAAACCA 822
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      AAGAGTGAAAATGGACAAGATATTCGGTCTTCTTTAAATATGTTGTTTGGGTAAGCTAGC 882
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      AGCAAAAGAAATGGGTGCTGT 903
consensus_5085#1      ---------------------