cluster # 5087

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Oryza sativa
cluster # 5087 cluster # 5087 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5087#0 length = 793 sequences # 1

consensus_5087#1 length = 745 sequences # 1
consensus_5087#2 length = 281 sequences # 1

consensusID : consensus_5087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence

                              [GGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTGGATCTGGTGGATTTGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCCCTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTATCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCAGACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCATCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTAGGAAGAATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACACAGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGACGACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCTGAGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTGTACTGGTTGGAGGATTTGAGAAGATGCTGCAATCTTCAGCACGAGGAATTTCTATAGCATGAAGCAAGAGAGAGAAAGTGCGACGACATTGTTTGTGAAAAATAGACTTGATGTTAACTCCTGTATATATATATTTCTTTCAATTGGCTTTTCTTCAAAT]

[+] EMBL CB679803             [GGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTGGATCTGGTGGATTTGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCCCTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTATCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCAGACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCATCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTAGGAAGAATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACACAGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGACGACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCTGAGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTGTACTGGTTGGAGGATTTGAGAAGATGCTGCAATCTTCAGCACGAGGAATTTCTATAGCATGAAGCAAGAGAGAGAAAGTGCGACGACATTGTTTGTGAAAAATAGACTTGATGTTAACTCCTGTATATATATATTTCTTTCAATTGGCTTTTCTTCAAAT]




>consensus_5087#0
GGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGGAGGCAGC
GGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTGGATCTGGTGGATT
TGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCCCTCTCCCGCGAGTT
TCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTATCGAGATGAGCCA
GATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCAGACACAAGTTGAAT
GATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCATCGGTTTGTGTCC
CATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTAGGAAGAATTTGATC
CTTTTCCAACAGATCCTCACAGGTGGCTCAACACAGCTGGCAGCGGCGGGGTCGACGACA
CAGATCGAGCACCTTCCATCCACACCAATCCGACGACATCGGCTGCAGCTAGCTGCTACT
CTGTCACCGGATGGATTGAGGAGCACCCGAGCTGAGGTTTATGGTTGATTATACTTAACC
CTTTCGTGATTCTCCAACTAAATATGAAAATTGTACTGGTTGGAGGATTTGAGAAGATGC
TGCAATCTTCAGCACGAGGAATTTCTATAGCATGAAGCAAGAGAGAGAAAGTGCGACGAC
ATTGTTTGTGAAAAATAGACTTGATGTTAACTCCTGTATATATATATTTCTTTCAATTGG
CTTTTCTTCAAAT

consensusID : consensus_5087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 745
fasta sequence

                              [ATCCGACTTTTGTGGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTGGATCTGGTGGATTTGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCCCTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTATCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCAGACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCATCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTAGGAAGGTAATGAGATACACCTAATCATGCTTCCATTGCCAAATAATTTGCTAATCATGGTTTGCCATACGGCAAGCAGGATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACACAGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGACGACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCTGAGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTGTACTGGTTGGAGGATTTGAGAAGATG]

[+] EMBL CB649157             [ATCCGACTTTTGTGGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTGGATCTGGTGGATTTGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCCCTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTATCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCAGACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCATCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTAGGAAGGTAATGAGATACACCTAATCATGCTTCCATTGCCAAATAATTTGCTAATCATGGTTTGCCATACGGCAAGCAGGATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACACAGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGACGACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCTGAGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTGTACTGGTTGGAGGATTTGAGAAGATG]




>consensus_5087#1
ATCCGACTTTTGTGGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACA
GGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTG
GATCTGGTGGATTTGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCCC
TCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTA
TCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCAG
ACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCA
TCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTAG
GAAGGTAATGAGATACACCTAATCATGCTTCCATTGCCAAATAATTTGCTAATCATGGTT
TGCCATACGGCAAGCAGGATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACAC
AGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGAC
GACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCTG
AGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTGT
ACTGGTTGGAGGATTTGAGAAGATG

consensusID : consensus_5087#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CCGGCCCACCCCCCACCCCCATCCCGGGTCGCTACCCCCCACCCCACCATTTTAATCTCTGGAGTAATTTGTTTACTGCTAGAAAACACCTGGCATGTATATATACTGGTTTTACCATCTCTTACGGGTATNTCTATTTTTTTTGCACCAGCCTGGGTATCCGNTTTTTGTGGATCTGGGAACGGCTGGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGNAGGCAGCGGCGTGCTGGGTCTGTTCTNGNTAGCGGGCAGGGCGTNNAGGGAGTCAG]

[+] EMBL D42884               [CCGGCCCACCCCCCACCCCCATCCCGGGTCGCTACCCCCCACCCCACCATTTTAATCTCTGGAGTAATTTGTTTACTGCTAGAAAACACCTGGCATGTATATATACTGGTTTTACCATCTCTTACGGGTATNTCTATTTTTTTTGCACCAGCCTGGGTATCCGNTTTTTGTGGATCTGGGAACGGCTGGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGNAGGCAGCGGCGTGCTGGGTCTGTTCTNGNTAGCGGGCAGGGCGTNNAGGGAGTCAG]




>consensus_5087#2
CCGGCCCACCCCCCACCCCCATCCCGGGTCGCTACCCCCCACCCCACCATTTTAATCTCT
GGAGTAATTTGTTTACTGCTAGAAAACACCTGGCATGTATATATACTGGTTTTACCATCT
CTTACGGGTATNTCTATTTTTTTTGCACCAGCCTGGGTATCCGNTTTTTGTGGATCTGGG
AACGGCTGGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGNAGGCAGCGGCGTGCT
GGGTCTGTTCTNGNTAGCGGGCAGGGCGTNNAGGGAGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5087#0      -------------GGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACA 47
consensus_5087#1      ATCCGACTTTTGTGGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACA 60
consensus_5087#2      --------------------------------------------------CCGGCCCACC 10
                                                                         *** * ** 

consensus_5087#0      GGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTG 107
consensus_5087#1      GGAAGGAGGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTG 120
consensus_5087#2      C------CCCACCCCCATCCCGGGTC-GCTACCCCCCACCCCACCATTTT--AATCTCTG 61
                               ** *  * *** ** ** * *  * *   *  ** *  *    * **  **

consensus_5087#0      GATCTGGTGGATTTGTCGATGGAGT-CAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCC 166
consensus_5087#1      GATCTGGTGGATTTGTCGATGGAGT-CAGGTGGAGTGCCGTCGCCGATCTTCAACTTCCC 179
consensus_5087#2      GAG-TAATTTGTTTACTGCTAGAAAACACCTGGCATGT----ATATATACTGGTTTTACC 116
                      **  *  *   ***   * * **   **  ***  **         **  *    ** **

consensus_5087#0      CTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCT 226
consensus_5087#1      CTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCT 239
consensus_5087#2      ATCTCTTACGGGTATNTCTATTTTTT---TTGCACCAGCCTGGGTATCCGNTTTTTGTGG 173
                       ****   ** ** *       * *    **   * ****  ****       *      

consensus_5087#0      ATCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCA 286
consensus_5087#1      ATCGAGATGAGCCAGATCCGGCATCTACCTTCCACAGTTCCCCACCGAGAACAGGATGCA 299
consensus_5087#2      ATCTGGGAACGGCTGGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGNAGG---CA 230
                      ***  *    * * *  ** *  *         *  *    * ** *  *  ***   **

consensus_5087#0      GACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTC 346
consensus_5087#1      GACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTC 359
consensus_5087#2      GCGGCGTGCTG---GGTCTGTTCTNGNTAGCGGGCAGGG-CGTNNAGGGAGTCAG----- 281
                      *   *  * **   * *  *  *     ** *   *    * *  * *   * **     

consensus_5087#0      ATCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTA 406
consensus_5087#1      ATCGGTTTGTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGTA 419
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      GGAAGA------------------------------------------------------ 412
consensus_5087#1      GGAAGGTAATGAGATACACCTAATCATGCTTCCATTGCCAAATAATTTGCTAATCATGGT 479
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      -------------------ATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACA 453
consensus_5087#1      TTGCCATACGGCAAGCAGGATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACA 539
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      CAGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGA 513
consensus_5087#1      CAGCTGGCAGCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGA 599
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      CGACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCT 573
consensus_5087#1      CGACATCGGCTGCAGCTAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCCGAGCT 659
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      GAGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTG 633
consensus_5087#1      GAGGTTTATGGTTGATTATACTTAACCCTTTCGTGATTCTCCAACTAAATATGAAAATTG 719
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      TACTGGTTGGAGGATTTGAGAAGATGCTGCAATCTTCAGCACGAGGAATTTCTATAGCAT 693
consensus_5087#1      TACTGGTTGGAGGATTTGAGAAGATG---------------------------------- 745
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      GAAGCAAGAGAGAGAAAGTGCGACGACATTGTTTGTGAAAAATAGACTTGATGTTAACTC 753
consensus_5087#1      ------------------------------------------------------------
consensus_5087#2      ------------------------------------------------------------
                                                                                  

consensus_5087#0      CTGTATATATATATTTCTTTCAATTGGCTTTTCTTCAAAT 793
consensus_5087#1      ----------------------------------------
consensus_5087#2      ----------------------------------------