cluster # 5088

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Oryza sativa
cluster # 5088 cluster # 5088 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5088#0 length = 608 sequences # 2

consensus_5088#1 length = 432 sequences # 1

consensusID : consensus_5088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence

                              [GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAA-CTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGCGACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATCTCCTANNAAAAAGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA755023             [GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAA CTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGCGACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATCTCCTANNAAAAA                                              ]
[+] EMBL AU029851             [                                                                                                                                                                                   nTCCGGCCGCGCCAANTTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGC CCNTGGCGGCGACCTGGGCNCTTTTGGGAGGAGGCAGATNCAGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGNTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAAACTTCAAATCAAAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATCTCCTNTTGCTCNGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5088#0
GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTG
ATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATC
TCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTC
TCCGGCCGCGCCAACTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGC
CGTGGCGGCGACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCG
ACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCAC
ATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATG
TTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATATGT
TCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAA
CATTTTAATCTCCTANNAAAAAGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

consensusID : consensus_5088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGCTTCCTGGAAGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCGCCGTGGCGGCGACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGANATGAGTGAACTGTGGAACTGACATGGTGTTCAATCATCTGCGATTNTTAAGATGCTGATATCGATCGTCACTGGTTGCTTCAATGTATTTCTGGAGCTAACTTCAATCAAATGACCT]

[+] EMBL AU078227             [GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGCTTCCTGGAAGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCGCCGTGGCGGCGACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGANATGAGTGAACTGTGGAACTGACATGGTGTTCAATCATCTGCGATTNTTAAGATGCTGATATCGATCGTCACTGGTTGCTTCAATGTATTTCTGGAGCTAACTTCAATCAAATGACCT]




>consensus_5088#1
GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCA
CGAGGGCTCCCGCCGCAAGCTTCCTGGAAGATCCCGACGGCCGCGTCATCTCCGCTACCA
CGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCG
CCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCGCCGTGGCGGC
GACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCTTCGAAGATGCGACATTTGCT
CTCAAGGTTGGTGANATGAGTGAACTGTGGAACTGACATGGTGTTCAATCATCTGCGATT
NTTAAGATGCTGATATCGATCGTCACTGGTTGCTTCAATGTATTTCTGGAGCTAACTTCA
ATCAAATGACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5088#0      GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTG 60
consensus_5088#1      --------GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTG 52
                              ***************** * ********************************

consensus_5088#0      ATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATC 120
consensus_5088#1      ATCAAGCACGAGGGCTCCCGCCGCAAG-CTTCCTGGAAG-ATCCCGACGGCCGCGTCATC 110
                      *************************** * ********* ********************

consensus_5088#0      TCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTC 180
consensus_5088#1      TCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTC 170
                      ************************************************************

consensus_5088#0      TCCGGCCGCGCCAACTT-CGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCG 239
consensus_5088#1      TCCGGCCGCGCCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCG 230
                      ***************** ******* *************   ****** ***********

consensus_5088#0      CCGTGGCGGCGACCT-GGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATG 298
consensus_5088#1      CCGTGGCGGCGACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACC-TTCGAAGATG 289
                      *************** ********************************* **********

consensus_5088#0      CGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTC 358
consensus_5088#1      CGACATTTGCTCTCAAGGTTGGTGANATGAGTGA-ACTGTGGA-ACTGACA-TGGTGTTC 346
                      ************************* ******** ******** ******* ********

consensus_5088#0      ACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAA 418
consensus_5088#1      A-ATCATCT---GCGATTNTTAAGATGCTGATATCGATCGTCA-CTGGTTG-CTTC--AA 398
                      * ******    **  *  ************************ ******* ****  **

consensus_5088#0      TGTTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATAT 478
consensus_5088#1      TGTA--TTTCTGG-AGCT---AACTTCAATC--AAATGACCT------------------ 432
                      ***   ******* ***    *******      ***** *                   

consensus_5088#0      GTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATG 538
consensus_5088#1      ------------------------------------------------------------
                                                                                  

consensus_5088#0      AACATTTTAATCTCCTANNAAAAAGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 598
consensus_5088#1      ------------------------------------------------------------
                                                                                  

consensus_5088#0      AAAAAAAAAA 608
consensus_5088#1      ----------