These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_51#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCANGGTTAGGTATTATCTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACAAATATTCCACCTAATGCTAAAATTT] [+] EMBL CA765270 [TGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCANGGTTAGGTATTATCTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACAAATATTCCACCTAATGCTAAAATTT] consensusID : consensus_51#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CGAGACAAGGGGGGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGGTTAGGTATTATTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTNGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTAA] [-] EMBL CA761367 [CGAGACAAGGGGGGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGGTTAGGTATTATTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTNGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_51#0 TGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAA 60 consensus_51#1 ------------------------------CGAGACAAGGGGGGGAGGTACCAAGACGAA 30 * ** * * ***************** consensus_51#0 CGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCANGGTTAGG 120 consensus_51#1 CGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGG-TTAGG 89 **************************************************** * ***** consensus_51#0 TATTATCTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTG 180 consensus_51#1 TATTAT-TTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTG 148 ****** ***************************************************** consensus_51#0 CTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAAT 240 consensus_51#1 CTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAAT 208 ************************************************************ consensus_51#0 CATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCAC 300 consensus_51#1 CATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCAC 268 ************************************************************ consensus_51#0 GCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCC 360 consensus_51#1 GCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCC 328 ************************************************************ consensus_51#0 GACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAA 420 consensus_51#1 GACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAA 388 ************************************************************ consensus_51#0 TCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAA 480 consensus_51#1 TCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTNGTCTTCGTATCGACAA 448 ******************************************* **************** consensus_51#0 ATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGA 540 consensus_51#1 ATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGA 508 ************************************************************ consensus_51#0 ACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAA 600 consensus_51#1 ACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAA 568 ************************************************************ consensus_51#0 TGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACA 660 consensus_51#1 TGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTAA------------------- 609 **************************************** consensus_51#0 AATATTCCACCTAATGCTAAAATTT 685 consensus_51#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||