cluster # 510

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Oryza sativa
cluster # 510 cluster # 510 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_510#0 length = 841 sequences # 1

consensus_510#1 length = 769 sequences # 1

consensusID : consensus_510#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 841
fasta sequence

                              [CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCTGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAAACAAATTCATGGGCATATTTTAAAAGATGGCTACTGATGGATATAGTAATTACTCCCTCTAGTAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCACAATATGCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTTTAAGAACAAAATTAGTGCATATGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAGTAAGGCAATATATAGGGAACTTTGGTAGTGGAATTCCATTTGGAGTTACAGATGAATATAGATGACTCCATGTACCATGCAAAGGCACGAAGCAAAGGAACTGAGACATTTCATAATAACATAATAACCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGGTACAACTCATTAACTAAACCCTATAGTCCCATTATTTCTGTACCATCCATCCCATCACTGACATAAAACTGTTGACCCA]

[+] EMBL CB668849             [CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCTGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAAACAAATTCATGGGCATATTTTAAAAGATGGCTACTGATGGATATAGTAATTACTCCCTCTAGTAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCACAATATGCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTTTAAGAACAAAATTAGTGCATATGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAGTAAGGCAATATATAGGGAACTTTGGTAGTGGAATTCCATTTGGAGTTACAGATGAATATAGATGACTCCATGTACCATGCAAAGGCACGAAGCAAAGGAACTGAGACATTTCATAATAACATAATAACCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGGTACAACTCATTAACTAAACCCTATAGTCCCATTATTTCTGTACCATCCATCCCATCACTGACATAAAACTGTTGACCCA]




>consensus_510#0
CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAAT
CATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTG
CTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCG
CATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACT
TGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCC
TGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAAAC
AAATTCATGGGCATATTTTAAAAGATGGCTACTGATGGATATAGTAATTACTCCCTCTAG
TAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCACAATAT
GCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTTTAAGAA
CAAAATTAGTGCATATGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAGTAAGGCA
ATATATAGGGAACTTTGGTAGTGGAATTCCATTTGGAGTTACAGATGAATATAGATGACT
CCATGTACCATGCAAAGGCACGAAGCAAAGGAACTGAGACATTTCATAATAACATAATAA
CCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGGTACAACTCATTAACTAAA
CCCTATAGTCCCATTATTTCTGTACCATCCATCCCATCACTGACATAAAACTGTTGACCC
A

consensusID : consensus_510#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [CAATACCATTGGATAAAGTCTAGTGTCAAAGATGTATGGTACATAGCACGTAACATGGAAATTCAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTGTCCCTATAAAACTGGACTCAAAAGGGAGAAATTTCAGTTTATAAGGAACAATGTAATTTTATCACTTCTACTGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTGCCTTCTTCCTGGGTGTCACTATCTGCTTTCCGGATTCTGATCTTGTACTTGAGCTCAAACTCCGTGATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCTCGAGGCCCTCCTTGTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTTCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCCGCCGCGGCGGGCGAACTCCGGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGTCGGCAG]

[-] EMBL AK067874             [CAATACCATTGGATAAAGTCTAGTGTCAAAGATGTATGGTACATAGCACGTAACATGGAAATTCAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTGTCCCTATAAAACTGGACTCAAAAGGGAGAAATTTCAGTTTATAAGGAACAATGTAATTTTATCACTTCTACTGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTGCCTTCTTCCTGGGTGTCACTATCTGCTTTCCGGATTCTGATCTTGTACTTGAGCTCAAACTCCGTGATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCTCGAGGCCCTCCTTGTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTTCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCCGCCGCGGCGGGCGAACTCCGGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGTCGGCAG]




>consensus_510#1
CAATACCATTGGATAAAGTCTAGTGTCAAAGATGTATGGTACATAGCACGTAACATGGAA
ATTCAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTGTCCCTATAAAA
CTGGACTCAAAAGGGAGAAATTTCAGTTTATAAGGAACAATGTAATTTTATCACTTCTAC
TGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTGCCTTCT
TCCTGGGTGTCACTATCTGCTTTCCGGATTCTGATCTTGTACTTGAGCTCAAACTCCGTG
ATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCTCGAGGCCC
TCCTTGTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTTCAACCAGCACTCCC
CCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGG
GAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCA
GAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCA
CCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAG
AGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCCGCCGCGGCGGGCGAACTCC
GGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGTCGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_510#0      CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAAT 60
consensus_510#1      ------------------------------------------------------CAATAC 6
                                                                           *   * 

consensus_510#0      CATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTG 120
consensus_510#1      CATTGGATAAAGTCTAGTGTCAAAGATGTATGGTAC-ATAGCAC--GTAACATGGAAATT 63
                     ****   **    *   *      *     ***  * ** ****   * **  ** * * 

consensus_510#0      CTCACTGACTT-CCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGC 179
consensus_510#1      CAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTG--TCCCTATAAAAC 121
                     *   * ** ** ***     * *      *  *****  *    **  **  *  * * *

consensus_510#0      GCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCAC 239
consensus_510#1      -----TGGACTCAAAAGGGAGAAAT--TTCAGTTTATAAGGAACAATGTAATTTTATCAC 174
                          * * *  * * *   * **   **   *   * * **    * *      * ***

consensus_510#0      TTG-GTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGG 298
consensus_510#1      TTCTACTGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTG 234
                     **    ** ****       ** *  **          *  * **   *     * *  *

consensus_510#0      CCTGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAA 358
consensus_510#1      CCTTCTTCCTGGGTGTCACTATCTGCTTTCCGGATTCTG--ATCTTGTACTTGAGCTCAA 292
                     *** *       * *    ** **   *  *  *    *  *** ** * **  *   **

consensus_510#0      ACAAATTCATGGGCATATT-TTAAAAGATGGCTACTGATGGATAT-AGTAATTACTCCCT 416
consensus_510#1      ACTCCGTGATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCT 352
                     **    * **   * * ** **        *   **  *  **   ** **  *** ***

consensus_510#0      CTAGTAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCA-- 474
consensus_510#1      CGAGGCCCTCCTTGTTGCGTTGCACTGCAGGCAAGA--CCTCCTTGATAGTCCGTTCAAC 410
                     * **         * *   ** *  *  *   ****  *  * ***** *   *  **  

consensus_510#0      CAATATGCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTT 534
consensus_510#1      CAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACC 470
                     **  *  *    *     * ** ** *  *   * *  *   ** *   *  * * *   

consensus_510#0      TAAGAACAAAATTAGTGCATA-TGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAG 593
consensus_510#1      GATCACGAGGG--AGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGT 528
                      *  *  *     *****  * ** *     *** * *      *  *   *  ** *  

consensus_510#0      TAAGGCAATATATAGGGAACTTTGGTAGTGGAATT-----CCATTTGGAGTTACAGATGA 648
consensus_510#1      TGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGC--TCGTTGATGA 586
                     * *  ** *  * ** * *  **** *      **     *******   *    *****

consensus_510#0      ATA--TAGATGACTCCATGTACCATGCAAAGGCACGAAGCAAAGGA---ACTGAGACATT 703
consensus_510#1      CTTCTTTGTCAGCACCACTTGGT-TGACCAGCCATTTTGCTTGGAATCCACTAAAACATA 645
                      *   * *    * ***  *    **   ** **    **   * *   *** * **** 

consensus_510#0      TCATAATAACATAATAA-CCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGG 762
consensus_510#1      AATAGATTACAAAAGAGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCC--GC 703
                          ** *** ** *  ****   * *   **    * *  *  ****  *****  * 

consensus_510#0      TACAACTCATTAACTAAACCCTATAGTC-CCATTATTTCTGTACCATC-CATCCCATCAC 820
consensus_510#1      CGCGGCGGGCGAACTCCGGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGT 763
                       *  *     ****       *  **   *   *  *  *   *  * *   *  *   

consensus_510#0      TGACATAAAACTGTTGACCCA 841
consensus_510#1      CGGCAG--------------- 769
                      * **