Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5100 cluster # 5100       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5100#0 length = 1593 sequences # 3  

consensusID : consensus_5100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1593
fasta sequence
                              [CGGGGTCACCACCATCGAGCTCGTATGGAGCGGAGGGCGCAGCCGGTGTCGGCGGCGGTGGCGCCGGTGACGGGGAGGAGGAAGGGTGCGGCGGCGAGCCGGAAGTGGATGGTGGTGCCGGCGGTGGGGGAGGAGCGGAGGGTGGAGTTTGGGAAGCACCAGATCATGAAGATGACGGGGCTCCCCGGGCGCGACCTCCGGGTGCTCGACCCGGTCCTCTCCTACCCGTCCACCATCCTCGGCCGCGACCGCGCCATCGTCGTCAGGCTCCAGGGCGTCAAGGCCATCATCACCGCCACCGAGGTGCTCGTCCCCGACCACGACGACGTCCTCCTCGCCTCCTTCCTCCTCGACCTCCGCTCCCGCCTCTCCCTCCCGGATGCGGCGCCTAGCACGAATCCGGCGGCGGCTGATCGCGGGAACGGGACGGAGCAGGGCGATCAGGGGAGCGTGCCAGGTCTGGCGATCAGCGGTGCTGGCAACGCCAAGATCCCGCCCTTTGAGTTCAAGGTGCTCGAGGTCTGCCTCGAGCACGCATGCAAAGACTTGGAATCTCAGACACGCTCTCTGGAGAAGGAGGCGTATCCGGCCTTGGACAAGCTGGGATCGAAGGTTAGCACGCTGAACCTGGATCGCGTCAGGAATCTGAAGAGCCGCATGGTTGATCTCTCAGGGCGCGTGCAGAAGATTAGGGATGAGCTGGAGCACTTGCTGGATGACGACATGGACATGTCCGAGATGTACCTGACGAGGAAGCTGTCGTTCCAAGGGCTCAGCGGATCGCTGAGCAGAGCGGATTCACACAAGTACGCATCTGTTGATCATGACGACGATAGGGAGGAGGAAGACCATGACGATGAGACAGAGAGTGGCCGTGAAAGTTCTGTTTATGTTAAGCCTGATATAGAAGAGTTGGAAATGCTTCTGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCATATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGACGAGAAGCAGAACCAGCTGCTGCAGATGGGCGTGATGCTGACGACGGCGACGGTGGTGGTCACCGCGGGCATCGTGGTGGTGAGCCTGTTCGGCATGAACATCC-ACATCGACCTGATGAAAGACCCGGAGACCCCCGAGATGGTGAGGATGTCCAACATGCACTTTTGGGAGACCACCTTCGGCACGGTCGCCGGCTGCATCGCCATATACCTCCTGGCGATCTACGCTGGGAGGAAGAGCAAGATCCTGCAGTGATGCTTCCCAACAGAGGAAGCTAAGCGTCAGGTTGCGAGTTCTGCAGCCTGGCTGCGATTTTGCTGGGCAGTGGCGTAGTTGATAGGTTGTGTATGGATGTGATGCATTTTTGTTGATTTCGTATGGTGTGGGAGCAATAATAATCGAACGATCTCTCTCCATTTCCTGCTCTTATTAGAAGTTAGCACTTAGCACTACTATGTTAAATTTCGGCCAAAGGAACCACTATGTTAAATTTCGGCCAAAGGAACCCTTTCAGAAATGCTCTTGCCACATTTCGCATTCGAAGTAAATCCAAAAAAGGTACCAGTA]

[+] EMBL AK073453             [CGGGGTCACCACCATCGAGCTCGTATGGAGCGGAGGGCGCAGCCGGTGTCGGCGGCGGTGGCGCCGGTGACGGGGAGGAGGAAGGGTGCGGCGGCGAGCCGGAAGTGGATGGTGGTGCCGGCGGTGGGGGAGGAGCGGAGGGTGGAGTTTGGGAAGCACCAGATCATGAAGATGACGGGGCTCCCCGGGCGCGACCTCCGGGTGCTCGACCCGGTCCTCTCCTACCCGTCCACCATCCTCGGCCGCGACCGCGCCATCGTCGTCAGGCTCCAGGGCGTCAAGGCCATCATCACCGCCACCGAGGTGCTCGTCCCCGACCACGACGACGTCCTCCTCGCCTCCTTCCTCCTCGACCTCCGCTCCCGCCTCTCCCTCCCGGATGCGGCGCCTAGCACGAATCCGGCGGCGGCTGATCGCGGGAACGGGACGGAGCAGGGCGATCAGGGGAGCGTGCCAGGTCTGGCGATCAGCGGTGCTGGCAACGCCAAGATCCCGCCCTTTGAGTTCAAGGTGCTCGAGGTCTGCCTCGAGCACGCATGCAAAGACTTGGAATCTCAGACACGCTCTCTGGAGAAGGAGGCGTATCCGGCCTTGGACAAGCTGGGATCGAAGGTTAGCACGCTGAACCTGGATCGCGTCAGGAATCTGAAGAGCCGCATGGTTGATCTCTCAGGGCGCGTGCAGAAGATTAGGGATGAGCTGGAGCACTTGCTGGATGACGACATGGACATGTCCGAGATGTACCTGACGAGGAAGCTGTCGTTCCAAGGGCTCAGCGGATCGCTGAGCAGAGCGGATTCACACAAGTACGCATCTGTTGATCATGACGACGATAGGGAGGAGGAAGACCATGACGATGAGACAGAGAGTGGCCGTGAAAGTTCTGTTTATGTTAAGCCTGATATAGAAGAGTTGGAAATGCTTCTGGAAGCTTACTTTGTGCAGATCGATGGAACGCTGAATACCCTGTACCATATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATGCTGGACGAGAAGCAGAACCAGCTGCTGCAGATGGGCGTGATGCTGACGACGGCGACGGTGGTGGTCACCGCGGGCATCGTGGTGGTGAGCCTGTTCGGCATGAACATCC ACATCGACCTGATGAAAGACCCGGAGACCCCCGAGATGGTGAGGATGTCCAACATGCACTTTTGGGAGACCACCTTCGGCACGGTCGCCGGCTGCATCGCCATATACCTCCTGGCGATCTACGCTGGGAGGAAGAGCAAGATCCTGCAGTGATGCTTCCCAACAGAGGAAGCTAAGCGTCAGGTTGCGAGTTCTGCAGCCTGGCTGCGATTTTGCTGGGCAGTGGCGTAGTTGATAGGTTGTGTATGGATGTGATGCATTTTTGTTGATTTCGTATGGTGTGGGAGCAATAATAATCGAACGATCTCTCTCCATTTCCTGCTCTTATTAGAAGTTAGCACTTAGCACTACTATGTTAAATTTCGGCCAAAGGAACCACTATGTTAAATTTCGGCCAAAGGAACCCTTTCAGAAATGCTCTTGCCACATTTCGCATTCGAAGTAAATCCAAAAAAGGTACCAGTA]
[+] EMBL C72471               [                                                                                                                                                                       GAAGATGACGGGGCTCCCCGGGCGCGACCTCCGGGTGCTCGACCCGGTCCTCTCCTACCCGTCCACCATCCTCGGCCGCGACCGCGCCATCGTCGTCAGGCTCCAGGGCGTCAAGGCCATCATCACCGCCACCGAGGTGCTCGTCCCCGACCACGACGACGTCCTCCTCGCCTCCTTCCTCCTCGACCTCCGCTCCCGCCTCTCCCTCCCGGATGCNGCGCCTAGCACGAATCCGGCGGCGGCTGATCGCNGGAACGGGACGGAGCAGGGCGATCAGGGGAGCGTGCCAGGTCTGGCGATCAGCGGTGCTGGCAACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU172519             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCTGTTCGGCATGAACATCCNCCATCGACCTGATGAAAGACCCGGAGACCCCCGAGATGGTGAGGATGTCCAACATGCACTTTTGGGAGACCACCTTCGGCACGGTCGCCGGCTGCATCGCCATATACCTCCTGGCGATCTACGCTGGGAGGAAGAGCAAGATCCTGCAGTGATGCTTCCCAACAGAGGAAGCTAAGCGTCAGGTTGCGAGTTCTGCAGCCTGGCTGCGATTTTGCTGGGCAGTGGCGTAGTTGATAGGTTGTGTATGGATGTGATGCATTTTTGTTGATTTCGTATGGTGTGGGAGCAATAATAATCGAACGATCTCTCTCCATTTCCTGCTCTTATTAGAAGTTAGCACTTAGCACTACTATGTTAAATTTCGGCCAAAGGAACCACTATGTTAAATTTCGGCCAAAGGAACCCTTTCAGAAAaa                                                ]


>consensus_5100#0 CGGGGTCACCACCATCGAGCTCGTATGGAGCGGAGGGCGCAGCCGGTGTCGGCGGCGGTG GCGCCGGTGACGGGGAGGAGGAAGGGTGCGGCGGCGAGCCGGAAGTGGATGGTGGTGCCG GCGGTGGGGGAGGAGCGGAGGGTGGAGTTTGGGAAGCACCAGATCATGAAGATGACGGGG CTCCCCGGGCGCGACCTCCGGGTGCTCGACCCGGTCCTCTCCTACCCGTCCACCATCCTC GGCCGCGACCGCGCCATCGTCGTCAGGCTCCAGGGCGTCAAGGCCATCATCACCGCCACC GAGGTGCTCGTCCCCGACCACGACGACGTCCTCCTCGCCTCCTTCCTCCTCGACCTCCGC TCCCGCCTCTCCCTCCCGGATGCGGCGCCTAGCACGAATCCGGCGGCGGCTGATCGCGGG AACGGGACGGAGCAGGGCGATCAGGGGAGCGTGCCAGGTCTGGCGATCAGCGGTGCTGGC AACGCCAAGATCCCGCCCTTTGAGTTCAAGGTGCTCGAGGTCTGCCTCGAGCACGCATGC AAAGACTTGGAATCTCAGACACGCTCTCTGGAGAAGGAGGCGTATCCGGCCTTGGACAAG CTGGGATCGAAGGTTAGCACGCTGAACCTGGATCGCGTCAGGAATCTGAAGAGCCGCATG GTTGATCTCTCAGGGCGCGTGCAGAAGATTAGGGATGAGCTGGAGCACTTGCTGGATGAC GACATGGACATGTCCGAGATGTACCTGACGAGGAAGCTGTCGTTCCAAGGGCTCAGCGGA TCGCTGAGCAGAGCGGATTCACACAAGTACGCATCTGTTGATCATGACGACGATAGGGAG GAGGAAGACCATGACGATGAGACAGAGAGTGGCCGTGAAAGTTCTGTTTATGTTAAGCCT GATATAGAAGAGTTGGAAATGCTTCTGGAAGCTTACTTTGTGCAGATCGATGGAACGCTG AATACCCTGTACCATATCCGTGAATACGCGGACGACACGGAGGATTACATCAACATAATG CTGGACGAGAAGCAGAACCAGCTGCTGCAGATGGGCGTGATGCTGACGACGGCGACGGTG GTGGTCACCGCGGGCATCGTGGTGGTGAGCCTGTTCGGCATGAACATCCACATCGACCTG ATGAAAGACCCGGAGACCCCCGAGATGGTGAGGATGTCCAACATGCACTTTTGGGAGACC ACCTTCGGCACGGTCGCCGGCTGCATCGCCATATACCTCCTGGCGATCTACGCTGGGAGG AAGAGCAAGATCCTGCAGTGATGCTTCCCAACAGAGGAAGCTAAGCGTCAGGTTGCGAGT TCTGCAGCCTGGCTGCGATTTTGCTGGGCAGTGGCGTAGTTGATAGGTTGTGTATGGATG TGATGCATTTTTGTTGATTTCGTATGGTGTGGGAGCAATAATAATCGAACGATCTCTCTC CATTTCCTGCTCTTATTAGAAGTTAGCACTTAGCACTACTATGTTAAATTTCGGCCAAAG GAACCACTATGTTAAATTTCGGCCAAAGGAACCCTTTCAGAAATGCTCTTGCCACATTTC GCATTCGAAGTAAATCCAAAAAAGGTACCAGTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)