cluster # 5111

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Oryza sativa
cluster # 5111 cluster # 5111 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5111#0 length = 1287 sequences # 1

consensus_5111#1 length = 589 sequences # 2

consensusID : consensus_5111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1287
fasta sequence

                              [CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTACTCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCACGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATCACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCTTCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGCAGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGGAAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGCCCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTCTCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAGCTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGGGAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAGCAAGATCGTTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCGGTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCCCATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCATCTACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTGCTGCAAGTTTCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAGCACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGATCGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCATCACGTACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCACAGGAGGGAGGATGACGAGCTGAAACTAGCAGATGCATGCTAATTAAGCTAATTATTGTGGTAACGTGGCCGACCAACCGGAGGGTGGCACATCATCACCATGCTACAGTTGCACAAGAAGTCGTCAACGCGACGGCTAAAGTAAACAAATCC]

[+] EMBL AK105481             [CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTACTCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCACGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATCACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCTTCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGCAGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGGAAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGCCCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTCTCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAGCTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGGGAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAGCAAGATCGTTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCGGTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCCCATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCATCTACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTGCTGCAAGTTTCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAGCACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGATCGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCATCACGTACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCACAGGAGGGAGGATGACGAGCTGAAACTAGCAGATGCATGCTAATTAAGCTAATTATTGTGGTAACGTGGCCGACCAACCGGAGGGTGGCACATCATCACCATGCTACAGTTGCACAAGAAGTCGTCAACGCGACGGCTAAAGTAAACAAATCC]




>consensus_5111#0
CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTAC
TCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCA
CGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATC
ACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCT
TCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGC
AGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGG
AAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGC
CCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTC
TCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAG
CTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGG
GAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAGCAAGATCG
TTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCGG
TGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCCC
ATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCATC
TACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTGCTGCAAGTTTCACC
GTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAGCACGT
CGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGATCGCC
GGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCATCACG
TACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCACAGGAG
GGAGGATGACGAGCTGAAACTAGCAGATGCATGCTAATTAAGCTAATTATTGTGGTAACG
TGGCCGACCAACCGGAGGGTGGCACATCATCACCATGCTACAGTTGCACAAGAAGTCGTC
AACGCGACGGCTAAAGTAAACAAATCC

consensusID : consensus_5111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence

                              [TACGTGGACATCGTCAAGTCGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGAGTCTGATCGACATCATCCGGTCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTTGTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCGCCGCATCTACC-TGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAA-CCGCCCTGCCGGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCATGCTA-ATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA]

[+] EMBL BM418689             [TACGTGGACATCGTCAAGTCGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGAGTCTGATCGACATCATCCGGTCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTTGTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCGCCGCATCTACC TGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAA CCGCCCTGCCGGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCATGCTA ATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAA ]
[+] EMBL BM419583             [                                                                                                                     GTTGTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCGCCGCATCTACCGTGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAAGCCGCCCTGCCGGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCATGCTATATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA]




>consensus_5111#1
TACGTGGACATCGTCAAGTCGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGA
GTCTGATCGACATCATCCGGTCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTT
GTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCG
CCGCATCTACCTGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTG
CAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAACCGCCCTGCC
GGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCAT
GCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTAT
AGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCT
AGCAGATGCATGCTAATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTG
ACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5111#0      CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTAC 60
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      TCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCA 120
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      CGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATC 180
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      ACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCT 240
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      TCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGC 300
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      AGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGG 360
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      AAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGC 420
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      CCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTC 480
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      TCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAG 540
consensus_5111#1      ------------------------------------------------------------
                                                                                  

consensus_5111#0      CTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGG 600
consensus_5111#1      ---------------------------------------------TACGTGGACATCGTC 15
                                                                     *  * ***     

consensus_5111#0      GAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAG-CAAGATC 659
consensus_5111#1      AAGT-CGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGAGTCTGATCGACATC 74
                       *** *  ***   *   *  *   * **  *    **  *   **  **   * * ***

consensus_5111#0      GTTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCG 719
consensus_5111#1      ATCCGG-------TCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTTGTCGCCG 127
                       *   *       *  * *  * ************** *** ***** * ** * *****

consensus_5111#0      GTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCC 779
consensus_5111#1      GTGAA-GTCGCGGTGGCCGATCCATCTACACGC-ACAGAAGCCTCACCGATGCCGCCGC- 184
                      ***** ** ************ *********** * ********** ******** *** 

consensus_5111#0      CATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCAT 839
consensus_5111#1      ----------------------------------------------------------AT 186
                                                                                **

consensus_5111#0      CTACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTG----CTGCAAGTT 895
consensus_5111#1      CTACCTGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCT 246
                      ****  *** * *********** ** ***  ***************    ******* *

consensus_5111#0      TCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAG 955
consensus_5111#1      TCACCGCGCTGGAGCGGGCTAACCATG--------------------------------- 273
                      ****** ** ***** * ** ** ***                                 

consensus_5111#0      CACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGA 1015
consensus_5111#1      -----------------GAGGAGGTCGTCGTGAA-CCGCCCTGCCGGAGTGCGCCGAGGA 315
                                       *** *************      * * *****  ****** **

consensus_5111#0      TCGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCA 1075
consensus_5111#1      TCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCA 375
                      ********************************   * * * * *****************

consensus_5111#0      TCACGTACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCAC 1135
consensus_5111#1      TCACGCATG----GCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCAC 431
                      ***** * *    ** *********** ****** * * ******** * **********

consensus_5111#0      AGGAGGGAGGATGACGAGCTGA-----------------------AACTAGCAGATGCAT 1172
consensus_5111#1      AGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCAT 491
                      ****** **** *******                          * *************

consensus_5111#0      GCTAATTAAGCTAATTATTGTGGTAACGTGGCCGACCAACCGGAGGGTGGCACATCATCA 1232
consensus_5111#1      GCTAATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCA 551
                      ********* ************* ************************* **********

consensus_5111#0      CCATGCTACAGTT----GCACAAGAAGTCGTCAACGCGACGGCTAAAGTAAACAAATCC 1287
consensus_5111#1      CCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA--------------------- 589
                      *************    *** ******* *** *