cluster # 5115

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Oryza sativa
cluster # 5115 cluster # 5115 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5115#0 length = 548 sequences # 2

consensus_5115#1 length = 337 sequences # 1

consensusID : consensus_5115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 548
fasta sequence

                              [CCTGTTCGCGAGCCTCCCAAGATCTGGTCGTGACGAATTAAACTAGCCAGCTGAGCTCTAGCTACCTCCTAGCCTATCGATGATGGCCACACCTAGAAGCTGCAGCGGCCGGCCGCTGATGCTGCTCGTCCTCTTCACGGTGATCGTGATCTCGGCGACGAAGCTGCATCTGCACGAGGCGCCCATCATCATGGCCTCCGCGAGGACTTTGGAAGAAGCAGATTTAGGTCCTCCTCAGGGAACTTGCACCAATCCTCCAGGGCTACAATGCCCGCCAACGGCNGGTTCCGAACCCACCCCCATCCCCGCCTGCGCAGCCATGAGCTCATGTGAACATTAAATATATTCTACTTCTATACTCCATTTCACCACGTACGTGAAAAATAAGTAAACAATCAAAAAACTCAGTTTGTTATTCCTAGCGCATTAAAAATTCNATGTCAGCGATTTGTGTCATTGGCTGCTGTCTCTTTGAGTACAATGCGTGTATGTGTGTTTNTATGTAATAGTGGAAAGAAATAAATACTCATCAGAAAGCTGCTGTTGTT]

[+] EMBL CF336823             [CCTGTTCGCGAGCCTCCCAAGATCTGGTCGTGACGAATTAAACTAGCCAGCTGAGCTCTAGCTACCTCCTAGCCTATCGATGATGGCCACACCTAGAAGCTGCAGCGGCCGGCCGCTGATGCTGCTCGTCCTCTTCACGGTGATCGTGATCTCGGCGACGAAGCTGCATCTGCACGAGGCGCCCATCATCATGGCCTCCGCGAGGACTTTGGAAGAAGCAGATTTAGGTCCTCCTCAGGGAACTTGCACCAATCCTCCAGGGCTACAATGCCCGCCAACGGCNGGTTCCGAACCCACCCCCATCCCCGCCTGCGCAGCCATGAGCTCATGTGAACATTAAATATATTCTACTTCTATACTCCATTTCACCACGTACGTGAAAAATAAGTAAACAATCAAAAAA                                                                                                                                                 ]
[+] EMBL BE228795             [                gagaagnCTGGTCGTGACGAATTAAACTAGCCAGCTGAGCTCTAGCTACCTCCTAGCCTATCGATGATGGCCACACCTAGAAGCTGCAGCGGCCGGCCGCTGATGCTGCTCGTCCTCTTCACGGTGATCGTGATCTCGGCGACGAAGCTGCATCTGCACGAGGCGCCCATCATCATGGCCTCCGCGAGGACTTTGGAAGAAGCAGATTTAGGTCCTCCTCAGGGAACTTGCACCAATCCTCCANGGCTACAATGCCCGCCAACGGC GGTNCCGAACCCACCCCCATCCCCGCCTGCGCAGCCATGAGCTCATGTGAACATTAAATATATTCTACTTCTATACTCCATTTCACCACGTACGTGAAAAATAAGTAAACAATCAATGCTCTCAGTTTGTTATTCCTAGCGCATTAAAAATTCNATGTCAGCGATTTGTGTCATTGGCTGCTGTCTCTTTGAGTACAATGCGTGTATGTGTGTTTNTATGTAATAGTGGAAAGAAATAAATACTCATCAGAAAGCTGCTGTTGTT]




>consensus_5115#0
CCTGTTCGCGAGCCTCCCAAGATCTGGTCGTGACGAATTAAACTAGCCAGCTGAGCTCTA
GCTACCTCCTAGCCTATCGATGATGGCCACACCTAGAAGCTGCAGCGGCCGGCCGCTGAT
GCTGCTCGTCCTCTTCACGGTGATCGTGATCTCGGCGACGAAGCTGCATCTGCACGAGGC
GCCCATCATCATGGCCTCCGCGAGGACTTTGGAAGAAGCAGATTTAGGTCCTCCTCAGGG
AACTTGCACCAATCCTCCAGGGCTACAATGCCCGCCAACGGCNGGTTCCGAACCCACCCC
CATCCCCGCCTGCGCAGCCATGAGCTCATGTGAACATTAAATATATTCTACTTCTATACT
CCATTTCACCACGTACGTGAAAAATAAGTAAACAATCAAAAAACTCAGTTTGTTATTCCT
AGCGCATTAAAAATTCNATGTCAGCGATTTGTGTCATTGGCTGCTGTCTCTTTGAGTACA
ATGCGTGTATGTGTGTTTNTATGTAATAGTGGAAAGAAATAAATACTCATCAGAAAGCTG
CTGTTGTT

consensusID : consensus_5115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [AAAAAAGAAAACCTGTTCGCGAGCCTCCCAAGATTTGGTCGTGACGAATTAAACTAGCCAGTTGAGCTTTAGCTACTTCTTAGCCTATCGATGATGGCCACCCTTAAAAGTTGCAGCGGCCGGCCGCTGATGCTGTTGGTCCTTTTCACGGTGATCGTGATTTCGGCGACGAAGTTGCATTTGCACGAGGGGCCCATCATCATGGCCTCCGCGAGGATTTTGGAAAAAGCAGATTTAGGTCCTCCTCAGGGAACTTGCACCAATCCTCCAGGGTTACAATGCCCGCCAACGGGGGTTCCGAACCCACCCCCATCCCCGCTTGGGCAGCCATGAGTTC]

[-] EMBL CF317360             [AAAAAAGAAAACCTGTTCGCGAGCCTCCCAAGATTTGGTCGTGACGAATTAAACTAGCCAGTTGAGCTTTAGCTACTTCTTAGCCTATCGATGATGGCCACCCTTAAAAGTTGCAGCGGCCGGCCGCTGATGCTGTTGGTCCTTTTCACGGTGATCGTGATTTCGGCGACGAAGTTGCATTTGCACGAGGGGCCCATCATCATGGCCTCCGCGAGGATTTTGGAAAAAGCAGATTTAGGTCCTCCTCAGGGAACTTGCACCAATCCTCCAGGGTTACAATGCCCGCCAACGGGGGTTCCGAACCCACCCCCATCCCCGCTTGGGCAGCCATGAGTTC]




>consensus_5115#1
AAAAAAGAAAACCTGTTCGCGAGCCTCCCAAGATTTGGTCGTGACGAATTAAACTAGCCA
GTTGAGCTTTAGCTACTTCTTAGCCTATCGATGATGGCCACCCTTAAAAGTTGCAGCGGC
CGGCCGCTGATGCTGTTGGTCCTTTTCACGGTGATCGTGATTTCGGCGACGAAGTTGCAT
TTGCACGAGGGGCCCATCATCATGGCCTCCGCGAGGATTTTGGAAAAAGCAGATTTAGGT
CCTCCTCAGGGAACTTGCACCAATCCTCCAGGGTTACAATGCCCGCCAACGGGGGTTCCG
AACCCACCCCCATCCCCGCTTGGGCAGCCATGAGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5115#0      -----------CCTGTTCGCGAGCCTCCCAAGATCTGGTCGTGACGAATTAAACTAGCCA 49
consensus_5115#1      AAAAAAGAAAACCTGTTCGCGAGCCTCCCAAGATTTGGTCGTGACGAATTAAACTAGCCA 60
                                 *********************** *************************

consensus_5115#0      GCTGAGCTCTAGCTACCTCCTAGCCTATCGATGATGGCCACACCTAGAAGCTGCAGCGGC 109
consensus_5115#1      GTTGAGCTTTAGCTACTTCTTAGCCTATCGATGATGGCCACCCTTAAAAGTTGCAGCGGC 120
                      * ****** ******* ** ********************* * ** *** *********

consensus_5115#0      CGGCCGCTGATGCTGCTCGTCCTCTTCACGGTGATCGTGATCTCGGCGACGAAGCTGCAT 169
consensus_5115#1      CGGCCGCTGATGCTGTTGGTCCTTTTCACGGTGATCGTGATTTCGGCGACGAAGTTGCAT 180
                      *************** * ***** ***************** ************ *****

consensus_5115#0      CTGCACGAGGCGCCCATCATCATGGCCTCCGCGAGGACTTTGGAAGAAGCAGATTTAGGT 229
consensus_5115#1      TTGCACGAGGGGCCCATCATCATGGCCTCCGCGAGGATTTTGGAAAAAGCAGATTTAGGT 240
                       ********* ************************** ******* **************

consensus_5115#0      CCTCCTCAGGGAACTTGCACCAATCCTCCAGGGCTACAATGCCCGCCAACGGCNGGTTCC 289
consensus_5115#1      CCTCCTCAGGGAACTTGCACCAATCCTCCAGGGTTACAATGCCCGCCAACGG-GGGTTCC 299
                      ********************************* ******************  ******

consensus_5115#0      GAACCCACCCCCATCCCCGCCTGCGCAGCCATGAGCTCATGTGAACATTAAATATATTCT 349
consensus_5115#1      GAACCCACCCCCATCCCCGCTTGGGCAGCCATGAGTTC---------------------- 337
                      ******************** ** *********** **                      

consensus_5115#0      ACTTCTATACTCCATTTCACCACGTACGTGAAAAATAAGTAAACAATCAAAAAACTCAGT 409
consensus_5115#1      ------------------------------------------------------------
                                                                                  

consensus_5115#0      TTGTTATTCCTAGCGCATTAAAAATTCNATGTCAGCGATTTGTGTCATTGGCTGCTGTCT 469
consensus_5115#1      ------------------------------------------------------------
                                                                                  

consensus_5115#0      CTTTGAGTACAATGCGTGTATGTGTGTTTNTATGTAATAGTGGAAAGAAATAAATACTCA 529
consensus_5115#1      ------------------------------------------------------------
                                                                                  

consensus_5115#0      TCAGAAAGCTGCTGTTGTT 548
consensus_5115#1      -------------------