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Oryza sativa
cluster # 5118 cluster # 5118       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5118#0 length = 1284 sequences # 1  
consensus_5118#1 length = 837 sequences # 2  

consensusID : consensus_5118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1284
fasta sequence
                              [AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGGTCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAACTTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCTCCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAGCCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCCGCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGGTCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGCCAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCCGTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCCGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG]

[+] EMBL AK070692             [AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGGTCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAACTTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCTCCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAGCCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCCGCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGGTCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGCCAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCCGTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCCGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG]


>consensus_5118#0 AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGG TCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAAC TTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCT CCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAG CCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCC GCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGG TCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGC CAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCC GTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCC GTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCC TCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGG TGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTC GATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTC TGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTC AAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGA TTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCT CTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGAT TGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAG AGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATA GATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACT AGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTT TTGTTATTGATTACCTATACTTTG



consensusID : consensus_5118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 837
fasta sequence
                              [TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT]

[+] EMBL CB657727             [TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTC                                      ]
[-] EMBL CB657728             [                                                                                                                                                                                                                                                                                                                                                                                                                                       ATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT]


>consensus_5118#1 TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAG ACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCG CCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCT TCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCG CTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGA GTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTC GCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGAC GTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCC GTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCG GTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTC ATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTA AAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTC TAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGC TGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5118#0      AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGG 60
consensus_5118#1      ------------------------------------------------------------
                                                                                  

consensus_5118#0      TCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAAC 120
consensus_5118#1      ------------------------------------------------------------
                                                                                  

consensus_5118#0      TTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCT 180
consensus_5118#1      ------------------------------------------------------------
                                                                                  

consensus_5118#0      CCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAG 240
consensus_5118#1      ------------------------------------------------------------
                                                                                  

consensus_5118#0      CCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCC 300
consensus_5118#1      ----------------------------TCTACCCGTCGCCACTCTTGTTTTCGCCTCTC 32
                                                  ***   *********  * *  *  **    *

consensus_5118#0      GCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGG 360
consensus_5118#1      GCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAG 92
                      ***    ************** *  *** **  * ***** * ** **  *    *** *

consensus_5118#0      TCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGC 420
consensus_5118#1      CCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGC 152
                       ********* ***** *** ******* **************  **** *** * ****

consensus_5118#0      CAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCC 480
consensus_5118#1      CGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCC 212
                      *    * ***************   *** *     * *    ** ********** ****

consensus_5118#0      GTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGC- 539
consensus_5118#1      GTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCT 272
                      ***  ************ *    ********* ****** * *********** ***** 

consensus_5118#0      CGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCC 599
consensus_5118#1      CCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCC 332
                      * * ** ***  *    * ** *********** ** * ** ** ******** ******

consensus_5118#0      CTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTA--------CGGGGTGCCGAGC 651
consensus_5118#1      CTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGC 392
                      *********** *  ****************** *** *        ** *  *******

consensus_5118#0      CGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCAC-GTCAGCCGTAGAC------- 703
consensus_5118#1      CGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGA 452
                      ****** **** ******* ***   ****** **   * *** *   * **        

consensus_5118#0      CCGTGGTAGATCAGTTCG-ATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTT 762
consensus_5118#1      TCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATC-GATCTCGGCCGTC 511
                       *  **  *  *  ** * ***** ***** *******  * ***  ****** ***** 

consensus_5118#0      CGTT-CCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAA 821
consensus_5118#1      CGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCC-GCTGACGCAA 570
                      **** ****  ****   *  *** ************  ** ** **** *** * ****

consensus_5118#0      TAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTA 881
consensus_5118#1      TAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCA 630
                      *** ************************** *************************** *

consensus_5118#0      AATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGG 941
consensus_5118#1      TATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGG 690
                       **** ** ***************************************************

consensus_5118#0      ATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATC 1001
consensus_5118#1      ATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATC 750
                      ****** * ***************************************************

consensus_5118#0      CACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTC 1061
consensus_5118#1      CACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTA 810
                      *******  * ** *** ********** *********** ************ ***** 

consensus_5118#0      GATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGT 1121
consensus_5118#1      GATTCCGACGTTTCCGGAGAGTCCGTT--------------------------------- 837
                      ************ ************                                   

consensus_5118#0      CAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAG 1181
consensus_5118#1      ------------------------------------------------------------
                                                                                  

consensus_5118#0      CTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTG 1241
consensus_5118#1      ------------------------------------------------------------
                                                                                  

consensus_5118#0      TTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG 1284
consensus_5118#1      -------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)