These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1284 fasta sequence [AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGGTCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAACTTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCTCCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAGCCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCCGCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGGTCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGCCAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCCGTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCCGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG] [+] EMBL AK070692 [AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGGTCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAACTTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCTCCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAGCCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCCGCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGGTCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGCCAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCCGTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCCGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG] consensusID : consensus_5118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence [TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT] [+] EMBL CB657727 [TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTC ] [-] EMBL CB657728 [ ATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5118#0 AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGG 60 consensus_5118#1 ------------------------------------------------------------ consensus_5118#0 TCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAAC 120 consensus_5118#1 ------------------------------------------------------------ consensus_5118#0 TTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCT 180 consensus_5118#1 ------------------------------------------------------------ consensus_5118#0 CCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAG 240 consensus_5118#1 ------------------------------------------------------------ consensus_5118#0 CCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCC 300 consensus_5118#1 ----------------------------TCTACCCGTCGCCACTCTTGTTTTCGCCTCTC 32 *** ********* * * * ** * consensus_5118#0 GCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGG 360 consensus_5118#1 GCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAG 92 *** ************** * *** ** * ***** * ** ** * *** * consensus_5118#0 TCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGC 420 consensus_5118#1 CCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGC 152 ********* ***** *** ******* ************** **** *** * **** consensus_5118#0 CAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCC 480 consensus_5118#1 CGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCC 212 * * *************** *** * * * ** ********** **** consensus_5118#0 GTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGC- 539 consensus_5118#1 GTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCT 272 *** ************ * ********* ****** * *********** ***** consensus_5118#0 CGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCC 599 consensus_5118#1 CCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCC 332 * * ** *** * * ** *********** ** * ** ** ******** ****** consensus_5118#0 CTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTA--------CGGGGTGCCGAGC 651 consensus_5118#1 CTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGC 392 *********** * ****************** *** * ** * ******* consensus_5118#0 CGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCAC-GTCAGCCGTAGAC------- 703 consensus_5118#1 CGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGA 452 ****** **** ******* *** ****** ** * *** * * ** consensus_5118#0 CCGTGGTAGATCAGTTCG-ATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTT 762 consensus_5118#1 TCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATC-GATCTCGGCCGTC 511 * ** * * ** * ***** ***** ******* * *** ****** ***** consensus_5118#0 CGTT-CCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAA 821 consensus_5118#1 CGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCC-GCTGACGCAA 570 **** **** **** * *** ************ ** ** **** *** * **** consensus_5118#0 TAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTA 881 consensus_5118#1 TAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCA 630 *** ************************** *************************** * consensus_5118#0 AATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGG 941 consensus_5118#1 TATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGG 690 **** ** *************************************************** consensus_5118#0 ATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATC 1001 consensus_5118#1 ATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATC 750 ****** * *************************************************** consensus_5118#0 CACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTC 1061 consensus_5118#1 CACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTA 810 ******* * ** *** ********** *********** ************ ***** consensus_5118#0 GATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGT 1121 consensus_5118#1 GATTCCGACGTTTCCGGAGAGTCCGTT--------------------------------- 837 ************ ************ consensus_5118#0 CAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAG 1181 consensus_5118#1 ------------------------------------------------------------ consensus_5118#0 CTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTG 1241 consensus_5118#1 ------------------------------------------------------------ consensus_5118#0 TTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG 1284 consensus_5118#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||