These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACATACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCATGTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACAGGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCCCGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAATAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTGATGCATTGGGATATATAGAACTTCAGTATAACTTCATTAGCAATAAAAAGTTGGTACTATAATAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCAGCAAAAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGATACTTATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCTGTGTCGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTGTCTTGTTCAAATTTCAATGCAAAGTGTAAA] [+] EMBL CB625680 [TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACATACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCATGTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACAGGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCCCGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAATAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTGATGCATTGGGATATATAGAACTTCAGTATAACTTCATTAGCAATAAAAAGTTGGTACTATAATAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCAGCAAAAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGATACTTATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCTGTGTCGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTGTCTTGTTCAAATTTCAATGCAAAGTGTAAA] consensusID : consensus_5120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 681 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCACCTCAGGCGCACCATGGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAATTGGCATAATTTACAGGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAAAGCACCAAATTGCCCGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATGATTCTATGCAATAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACCCTAACTTCTTTTGAAACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCCCGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAAATATAAGGGCATGCTGAGGGCATTAACTGTTTCCATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCTCAACAATCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACA-CTAAAAACTGGACCCAAGGATAATCTCACA] [+] EMBL CA760250 [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCACCTCAGGCGCACCATGGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAATTGGCATAATTTACAGGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAAAGCACCAAATTGCCCGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATGATTCTATGCAATAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACCCTAACTTCTTTTGAAACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCCCGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAAATATAAGGGCATGCTGAGGGCATTAACTGTTTCCATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCTCAACAATCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACA CTAAAAACTGGACCCAAGGATAA ] [+] EMBL CF311846 [ TTTTTTACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCATGTGTGTTAAAATTACAAACTCAATTCAGATACAGAGTACAAGGAATTGGCATAATTTACAGGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACAAAATTGCCCGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAATAAAAATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTTGAGACAACAAGCTCAGAAAAGGTTGGTAGCAAAGCCAATAAATGAGCCCGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAGATATAATGGCATGCTGAGGGCATTAGCTGTTTCCATGTTTATTATTAGTCTAGCGAGTTCTTGTAGAACACAAATTGTCTCATCAATCCTTACACTA GGCAAT GGTCCTTCTCCTAGATCATTTTCAT CAGCTAAAAACT GACCC AGTATAATCTCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5120#0 TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACAT 60 consensus_5120#1 ----------------------------------------------TTTTTTTTTTTTTT 14 * * * consensus_5120#0 ACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCAT 120 consensus_5120#1 TTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCACCTCAGGCGCACCAT 74 * **** ********************************* ********* consensus_5120#0 GTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACA 180 consensus_5120#1 GGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAATTGGCATAATTTACA 134 * * *********************** *** **************************** consensus_5120#0 GGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAA 240 consensus_5120#1 GGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAA 194 **** ******************************************************* consensus_5120#0 CCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCC 300 consensus_5120#1 CCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAAAGCACCAAATTGCC 254 ******************************************** *************** consensus_5120#0 CGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAA 360 consensus_5120#1 CGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATGATTCTATGCAA 314 ************ *********************************** *********** consensus_5120#0 TAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAG 420 consensus_5120#1 TAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGACGTTGCAGTCCTAG 374 ************************* ********************************** consensus_5120#0 TTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCT-GA 479 consensus_5120#1 TTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACCCTAACTTCTTTTGA 434 *********************** ************************* ***** * ** consensus_5120#0 TGCATTGGGATATATAGAACTTCAGTATAACTTCATTAGC--AATAAAAAGTTGGTACT- 536 consensus_5120#1 AACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCCCGTCCATGGGACTC 494 ** * * * * * ** ** ** ** * *** *** consensus_5120#0 ATAATAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCA 596 consensus_5120#1 ATTCTTCTCTAAAGCT--TCTTTTAAATATAAGGGCAT-GCTGAGGGCATTAACTGTTTC 551 ** * ** **** * *** * * * ** ** * * ** *** * ** consensus_5120#0 GCAAAAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGA 656 consensus_5120#1 C-----ATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCT--CAACAA 604 * * * * * * * * * * ***** ** ** * * consensus_5120#0 TACTTATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCT 716 consensus_5120#1 TCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACACTAAAAACTGGAC 664 * **** * * * ** * * *** * * * * * * * * * consensus_5120#0 GTGTCGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTG 776 consensus_5120#1 ---CCAAGGATAATCTCACA---------------------------------------- 681 * * *** * * *** consensus_5120#0 TCTTGTTCAAATTTCAATGCAAAGTGTAAA 806 consensus_5120#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||