These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1904 fasta sequence [CGGGACCAAAAAACCAAACCTGAATCCGGCTGATCCCTAAAACCAAAAATTCCCCCAACAATTTTACTCGCGCGGGGCTCATCGTCGCCATGGACGGCGATGCGGGCGGCCGGGGAGACGTGACCTTCGCCGGTCCCGGCGGCGGCCGTTCCCCTCGCCCCCGTCGACCTGTCCGTCGGGGAACCAGATACCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTGGAAGGAGGAGAAGGGTTGGGAGAAGAAGGGCGCAGCGAGGAAGATCGACCTCGTCGGAGGATCATCCGCCTCGTCCGTCCAGGTCTAGCAGCTTGGGATACACAATGTCAAGGGGGCTTGTGGGCCCTTGATGGGCCGTCGGGCGATCGCCGGCCCTATAGCCCCTAGGCTTTATGGGCCGGAAAGGCTTCTTCGGCCCTTGCGGGGGCGAACTAGACATGGCGAAGTCGTCCTTCTTCGGCAGGTTTCGGCAGATTTGATCGAAGGGCCTCATGCCATCCGCCAACAATTACTGTTTGGAGGTGTTTGAGAGCCAACAAGCTTTTTACAGTCCCCTCCTTGATCCCCGGATGTGCATCAGCTGATCGTAGGCCTCGTGTTCGGCAAAGTGTACTTTATTCAGACCGCCCCAAACGGTCCCAAGGAATACGAGGACAAGTACAATCAAAAACCAAATCACTGGATGAGAAGAATGTAAGCGAGGTGAGTAGTGAGCTTGGCACTACAACTGCAGACATTCCAAAATTCAAGGCACTGATGATAAATGACTCACTCTCTAGGCTTGACTCAACTGAGAGGTCCAATGAGTCTACTTATGATGCTGGCACTCCTGGCAGCAACCAAGTGACCTCAAAATTTGTTAAGGACAAGCCCAAAGATGATTCAGATGATGTGGAGGAGTGTCTGCGCCAACTACAGGAATACTACTCTAAAGGGCATGTCCATACCAGCATCGAGGATGCTTGGAATGAAGTTGTAGCTTACGAGCATGTTGCTTTAACCGCCCTAGCTCTTGAGTGGGGTATGGAACCACCACCGGATCCCTTCCAGAAGCCGAAGTCTTCACTAGTTGATCAGGAAGCCCAGACACTTCGGGCACCACAGCAGACTTCTGATGCTGCTCAGCATAACATAGTGTCATGCAAGGAGGAACCGTCTCAGCAAATTTTGCCCATTCATCAACCAAGGACCGAGGTTTCTATAGAAGAAATTGTTGAGAGAGGGAAAAAATGGATGGGCGAGGAGGTGATGGTGGCTTTCAAGAAATATATTGAAGGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTTTCCATGTGGAAAGCTATTTCCAAAATTTCCACCATTATAATTTTAATGTCAAGATAAAAAAGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAGTAAAGATGATATTCAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGAAACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCCTTACATGTATACCAGTGGCTGAGCTCGTGTTACCCAAAAAAGATGTGTATATGGATGATGGTTTGGAGTAATCACTTAGATTATCATGATATGTTGGATGCTGACATAGTTTGTTTTCAGCAGCACTATTTCGCTCACAACACTTGTTGTAGTACTGAA-GTCTAAAATATTGTGCAACTCGTTTGTCTGACAGTATTGTGATGAAATTGGTATGCATGGTTGAACATCCCAAAAAAAAAAAAAAAAAAAAAACAAAAAA] [+] EMBL AK106845 [CGGGACCAAAAAACCAAACCTGAATCCGGCTGATCCCTAAAACCAAAAATTCCCCCAACAATTTTACTCGCGCGGGGCTCATCGTCGCCATGGACGGCGATGCGGGCGGCCGGGGAGACGTGACCTTCGCCGGTCCCGGCGGCGGCCGTTCCCCTCGCCCCCGTCGACCTGTCCGTCGGGGAACCAGATACCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTGGAAGGAGGAGAAGGGTTGGGAGAAGAAGGGCGCAGCGAGGAAGATCGACCTCGTCGGAGGATCATCCGCCTCGTCCGTCCAGGTCTAGCAGCTTGGGATACACAATGTCAAGGGGGCTTGTGGGCCCTTGATGGGCCGTCGGGCGATCGCCGGCCCTATAGCCCCTAGGCTTTATGGGCCGGAAAGGCTTCTTCGGCCCTTGCGGGGGCGAACTAGACATGGCGAAGTCGTCCTTCTTCGGCAGGTTTCGGCAGATTTGATCGAAGGGCCTCATGCCATCCGCCAACAATTACTGTTTGGAGGTGTTTGAGAGCCAACAAGCTTTTTACAGTCCCCTCCTTGATCCCCGGATGTGCATCAGCTGATCGTAGGCCTCGTGTTCGGCAAAGTGTACTTTATTCAGACCGCCCCAAACGGTCCCAAGGAATACGAGGACAAGTACAATCAAAAACCAAATCACTGGATGAGAAGAATGTAAGCGAGGTGAGTAGTGAGCTTGGCACTACAACTGCAGACATTCCAAAATTCAAGGCACTGATGATAAATGACTCACTCTCTAGGCTTGACTCAACTGAGAGGTCCAATGAGTCTACTTATGATGCTGGCACTCCTGGCAGCAACCAAGTGACCTCAAAATTTGTTAAGGACAAGCCCAAAGATGATTCAGATGATGTGGAGGAGTGTCTGCGCCAACTACAGGAATACTACTCTAAAGGGCATGTCCATACCAGCATCGAGGATGCTTGGAATGAAGTTGTAGCTTACGAGCATGTTGCTTTAACCGCCCTAGCTCTTGAGTGGGGTATGGAACCACCACCGGATCCCTTCCAGAAGCCGAAGTCTTCACTAGTTGATCAGGAAGCCCAGACACTTCGGGCACCACAGCAGACTTCTGATGCTGCTCAGCATAACATAGTGTCATGCAAGGAGGAACCGTCTCAGCAAATTTTGCCCATTCATCAACCAAGGACCGAGGTTTCTATAGAAGAAATTGTTGAGAGAGGGAAAAAATGGATGGGCGAGGAGGTGATGGTGGCTTTCAAGAAATATATTGAAGGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTTTCCATGTGGAAAGCTATTTCCAAAATTTCCACCATTATAATTTTAATGTCAAGATAAAAAAGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAGTAAAGATGATATTCAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGAAACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCCTTACATGTATACCAGTGGCTGAGCTCGTGTTACCCAAAAAAGATGTGTATATGGATGATGGTTTGGAGTAATCACTTAGATTATCATGATATGTTGGATGCTGACATAGTTTGTTTTCAGCAGCACTATTTCGCTCACAACACTTGTTGTAGTACTGAA GTCTAAAATATTGTGCAACTCGTTTGTCTGACAGTATTGTGATGAAATTGGTA ] [+] EMBL BQ908936 [ ATATTGAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGAAACCAAGGAATGGATGAC CTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCCTTACATGTATACCNGTGACTGAGCTCGTGTTACCCCAAAAAGATATGTATATGGATGATGGTTTGGAGTAATCACTTAGATTATCATGATGTGTTGGATGCTGACATAGTTTATTTTCAGCAGCACTATTTCGCT CGCTTGTTGTAGTACTGAAGGTCTAAAATATTGTGC ATTCGTTTGTCTGACAGTATTGTGATGAAATTGGTATGCATGGTTGAACATCCCAAAAAAAAAAAAAAAAAAAAAACAAAAAA] consensusID : consensus_5123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [GTATGGGCTAATGACACGAGCGTNAGCTAGGTGGTGGGGATTGTTTCGGANGGATATTCGNGGGGGTCTTGTCTAACCGTCGAGCAGCATTGTGATGTGTGCCGTGTGAAGCTANTAGTTAGTTACCTACGGTNTGTACTTGGAAGAGCTTGCAGGTGGGTTGTAGCACCACACGAGAGAAGAGATAACTCGTTATATTCGGATGATCGGTGTTNGGAGTATATCTACTTAGATTNATCATGGATGTGTTGGATGCTGACATAGTTTATTTTCTGGCTAGCACTATGTTCGCTCGCTTGTTGTAGTACTGAAGGTCTAAAATAGTTGTGCAATTCGTTTGTCTGACAGTAGTTGTGAGTGAAATGTGGTATGCAGTGGNTTGAACATCCAAAAAAAAAA] [+] EMBL BQ908372 [GTATGGGCTAATGACACGAGCGTNAGCTAGGTGGTGGGGATTGTTTCGGANGGATATTCGNGGGGGTCTTGTCTAACCGTCGAGCAGCATTGTGATGTGTGCCGTGTGAAGCTANTAGTTAGTTACCTACGGTNTGTACTTGGAAGAGCTTGCAGGTGGGTTGTAGCACCACACGAGAGAAGAGATAACTCGTTATATTCGGATGATCGGTGTTNGGAGTATATCTACTTAGATTNATCATGGATGTGTTGGATGCTGACATAGTTTATTTTCTGGCTAGCACTATGTTCGCTCGCTTGTTGTAGTACTGAAGGTCTAAAATAGTTGTGCAATTCGTTTGTCTGACAGTAGTTGTGAGTGAAATGTGGTATGCAGTGGNTTGAACATCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5123#0 CGGGACCAAAAAACCAAACCTGAATCCGGCTGATCCCTAAAACCAAAAATTCCCCCAACA 60 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 ATTTTACTCGCGCGGGGCTCATCGTCGCCATGGACGGCGATGCGGGCGGCCGGGGAGACG 120 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TGACCTTCGCCGGTCCCGGCGGCGGCCGTTCCCCTCGCCCCCGTCGACCTGTCCGTCGGG 180 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 GAACCAGATACCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 240 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CTTCTTCTTCTTCTTCTTCTTCTTCCCTGGAAGGAGGAGAAGGGTTGGGAGAAGAAGGGC 300 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 GCAGCGAGGAAGATCGACCTCGTCGGAGGATCATCCGCCTCGTCCGTCCAGGTCTAGCAG 360 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CTTGGGATACACAATGTCAAGGGGGCTTGTGGGCCCTTGATGGGCCGTCGGGCGATCGCC 420 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 GGCCCTATAGCCCCTAGGCTTTATGGGCCGGAAAGGCTTCTTCGGCCCTTGCGGGGGCGA 480 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 ACTAGACATGGCGAAGTCGTCCTTCTTCGGCAGGTTTCGGCAGATTTGATCGAAGGGCCT 540 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CATGCCATCCGCCAACAATTACTGTTTGGAGGTGTTTGAGAGCCAACAAGCTTTTTACAG 600 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TCCCCTCCTTGATCCCCGGATGTGCATCAGCTGATCGTAGGCCTCGTGTTCGGCAAAGTG 660 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TACTTTATTCAGACCGCCCCAAACGGTCCCAAGGAATACGAGGACAAGTACAATCAAAAA 720 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CCAAATCACTGGATGAGAAGAATGTAAGCGAGGTGAGTAGTGAGCTTGGCACTACAACTG 780 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CAGACATTCCAAAATTCAAGGCACTGATGATAAATGACTCACTCTCTAGGCTTGACTCAA 840 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CTGAGAGGTCCAATGAGTCTACTTATGATGCTGGCACTCCTGGCAGCAACCAAGTGACCT 900 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CAAAATTTGTTAAGGACAAGCCCAAAGATGATTCAGATGATGTGGAGGAGTGTCTGCGCC 960 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 AACTACAGGAATACTACTCTAAAGGGCATGTCCATACCAGCATCGAGGATGCTTGGAATG 1020 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 AAGTTGTAGCTTACGAGCATGTTGCTTTAACCGCCCTAGCTCTTGAGTGGGGTATGGAAC 1080 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 CACCACCGGATCCCTTCCAGAAGCCGAAGTCTTCACTAGTTGATCAGGAAGCCCAGACAC 1140 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TTCGGGCACCACAGCAGACTTCTGATGCTGCTCAGCATAACATAGTGTCATGCAAGGAGG 1200 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 AACCGTCTCAGCAAATTTTGCCCATTCATCAACCAAGGACCGAGGTTTCTATAGAAGAAA 1260 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TTGTTGAGAGAGGGAAAAAATGGATGGGCGAGGAGGTGATGGTGGCTTTCAAGAAATATA 1320 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TTGAAGGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTT 1380 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TCCATGTGGAAAGCTATTTCCAAAATTTCCACCATTATAATTTTAATGTCAAGATAAAAA 1440 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 AGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAGTAAAGATGATATTCA 1500 consensus_5123#1 --------------GTATGGGCTAATGACACGAGCGTNAGCTAGGTGGTGGGGATTGTTT 46 * *** ** * * * * * ** * *** * consensus_5123#0 GGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCAT 1560 consensus_5123#1 CGGANGGATATT--CGNGGGGGTCTTGTCTAACCGT---CGAGCAG-CATTGTGATGTGT 100 * ***** * *** * **** ** * ** *** *** * consensus_5123#0 GCAGAAACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGA 1620 consensus_5123#1 GCCGTGTGAAGCTANTAGTTAGTT---ACCTACGGTNTGTACTTGGAAG-AGCTTGCAGG 156 ** * * * * * * ** ** * * * * * * ** ** consensus_5123#0 TGGGCTCACCTGACACTGTATTTCCTTACATGTATACCAGTGGCTGAGCTCGTGTTACCC 1680 consensus_5123#1 TGGGT-----------TGTAGCACCACACGAGAGAAGAGAT-----AACTCGTTATATTC 200 **** **** ** ** * * * * ***** ** * consensus_5123#0 AAAAAAGATGTGTATATGGATGATGGTTTGGAGTAATCACTTAGATTA-TCATG-ATATG 1738 consensus_5123#1 GGA--TGATCGGTGTTNGGA----------GTATATCTACTTAGATTNATCATGGATGTG 248 * *** ** * *** * ** ********* ***** ** ** consensus_5123#0 TTGGATGCTGACATAGTTTGTTTTCAG--CAGCACTAT-TTCGCTCACAACACTTGTTGT 1795 consensus_5123#1 TTGGATGCTGACATAGTTTATTTTCTGGCTAGCACTATGTTCGCT-----CGCTTGTTGT 303 ******************* ***** * ******** ****** * ******** consensus_5123#0 AGTACTGAAG-TCTAAAATA-TTGTGCAACTCGTTTGTCTGACAGTA-TTGTGA-TGAAA 1851 consensus_5123#1 AGTACTGAAGGTCTAAAATAGTTGTGCAATTCGTTTGTCTGACAGTAGTTGTGAGTGAAA 363 ********** ********* ******** ***************** ****** ***** consensus_5123#0 T-TGGTATGCAT--GGTTGAACATCCCAAAAAAAAAAAAAAAAAAAAAACAAAAAA 1904 consensus_5123#1 TGTGGTATGCAGTGGNTTGAACATCCAAAAAAAAAA-------------------- 399 * ********* * ********** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||