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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1674 fasta sequence
[CGCGTTCGCGTGCTGCCAAATCCTCCTCCCCCTCCTCCGTCCCCACAACATTCTGTCGCGCCGATTCGACCGTTGCCGCCTCGCCCGCTCCGCGCACGCGCGCACGCCGCTCCCGTTCCCCTCGCGCACGCGCGGGCCATGGCGATCGACCTGGCGCCGCTGGCTGGGGAGTTGGAGGTCGCGGGGGCGGCGGTTGGAGGGAAGAAAGAGGAGGGGGAGGGGGAGGAGGGCGGGGTGTGCGGCGGGGAGGCCGTGGTGGTGGCCGCGGCGGACGCGGAGGTGGAGGGCCACCCCTACGACTTCCACGTGTCCGGGCCGCGGAACCTGCCGCCGCCCAACTGGAGGGAGATCATCCGTTCGAGCTGGAAGGATCCCAATTACAAAAGGATGGTAATGGCCTGCTTCATTCAAGCAGTCTACCTGCTTGAACTGGACAGGCAAGATGAGAAAGGAGAAGAGGATGGCCTTGCTCCAAAATGGTGGAAGCCCTTCAAATACAAGGTCACACAGACATTGGTCGATGAGAGAGATGGTTCCATCTATGGTGCCGTCCTTGAGTGGGATCGTTCTTCTGCTTTGTCTGACCTTATCCTCATAAGACCAAGTGGCGCGCCAAGGGCTGTGTTAGCTCTCCGAGGAACACTGCTTCAGAAGCCCACCATCAAGAGAGACCTACAAGATGATCTTCGCTTCCTGGTGTGGGAGAGCTTAAAAGGATCAGTCAGATATATTGGCGCTTTAGAAGCACTGAAGACAGCAGTTGAGAGGTTTGGTAGCGCTAATGTCAGTGTTGCTGGGCACTCCTTGGGAGCTGGATTTGCTCTTCAGGTTTGCAAAGAGCTCGCTAAGCAAGGAGTCTTCGTGGAGTGTCATCTGTTCAATCCACCTTCTGTTTCACTTGCCATGGGTGTAAGGAGTATGAGTGAGAAGGCCAGCTACCTGTGGAAAAAAGTTAAGGCTAGTCTACCACTGACTGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAAATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCAGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCGAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAAC--TATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCTGTCAGAGGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACCGATTAGCATCCATGTTTATGATTATGATCTTTTGATGGTGCAAAAAAAAAAAAAAA]
[+] EMBL AK108569 [CGCGTTCGCGTGCTGCCAAATCCTCCTCCCCCTCCTCCGTCCCCACAACATTCTGTCGCGCCGATTCGACCGTTGCCGCCTCGCCCGCTCCGCGCACGCGCGCACGCCGCTCCCGTTCCCCTCGCGCACGCGCGGGCCATGGCGATCGACCTGGCGCCGCTGGCTGGGGAGTTGGAGGTCGCGGGGGCGGCGGTTGGAGGGAAGAAAGAGGAGGGGGAGGGGGAGGAGGGCGGGGTGTGCGGCGGGGAGGCCGTGGTGGTGGCCGCGGCGGACGCGGAGGTGGAGGGCCACCCCTACGACTTCCACGTGTCCGGGCCGCGGAACCTGCCGCCGCCCAACTGGAGGGAGATCATCCGTTCGAGCTGGAAGGATCCCAATTACAAAAGGATGGTAATGGCCTGCTTCATTCAAGCAGTCTACCTGCTTGAACTGGACAGGCAAGATGAGAAAGGAGAAGAGGATGGCCTTGCTCCAAAATGGTGGAAGCCCTTCAAATACAAGGTCACACAGACATTGGTCGATGAGAGAGATGGTTCCATCTATGGTGCCGTCCTTGAGTGGGATCGTTCTTCTGCTTTGTCTGACCTTATCCTCATAAGACCAAGTGGCGCGCCAAGGGCTGTGTTAGCTCTCCGAGGAACACTGCTTCAGAAGCCCACCATCAAGAGAGACCTACAAGATGATCTTCGCTTCCTGGTGTGGGAGAGCTTAAAAGGATCAGTCAGATATATTGGCGCTTTAGAAGCACTGAAGACAGCAGTTGAGAGGTTTGGTAGCGCTAATGTCAGTGTTGCTGGGCACTCCTTGGGAGCTGGATTTGCTCTTCAGGTTTGCAAAGAGCTCGCTAAGCAAGGAGTCTTCGTGGAGTGTCATCTGTTCAATCCACCTTCTGTTTCACTTGCCATGGGTGTAAGGAGTATGAGTGAGAAGGCCAGCTACCTGTGGAAAAAAGTTAAGGCTAGTCTACCACTGACTGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAAATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCAGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCGAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAAC TATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATT ]
[-] EMBL CA760242 [ TTTAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACCTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCTGTCAGAGGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACCGATTAGCATCCATGTTTATGATTATGATCTTTTGATGGTGCAAAAAAAAAAAAAAA]
consensusID : consensus_5124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[GGACGAGACAAGGGGGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAGATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGA]
[+] EMBL CA767265 [GGACGAGACAAGGGGGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAGATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5124#0 CGCGTTCGCGTGCTGCCAAATCCTCCTCCCCCTCCTCCGTCCCCACAACATTCTGTCGCG 60
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 CCGATTCGACCGTTGCCGCCTCGCCCGCTCCGCGCACGCGCGCACGCCGCTCCCGTTCCC 120
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 CTCGCGCACGCGCGGGCCATGGCGATCGACCTGGCGCCGCTGGCTGGGGAGTTGGAGGTC 180
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 GCGGGGGCGGCGGTTGGAGGGAAGAAAGAGGAGGGGGAGGGGGAGGAGGGCGGGGTGTGC 240
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 GGCGGGGAGGCCGTGGTGGTGGCCGCGGCGGACGCGGAGGTGGAGGGCCACCCCTACGAC 300
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 TTCCACGTGTCCGGGCCGCGGAACCTGCCGCCGCCCAACTGGAGGGAGATCATCCGTTCG 360
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 AGCTGGAAGGATCCCAATTACAAAAGGATGGTAATGGCCTGCTTCATTCAAGCAGTCTAC 420
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 CTGCTTGAACTGGACAGGCAAGATGAGAAAGGAGAAGAGGATGGCCTTGCTCCAAAATGG 480
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 TGGAAGCCCTTCAAATACAAGGTCACACAGACATTGGTCGATGAGAGAGATGGTTCCATC 540
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 TATGGTGCCGTCCTTGAGTGGGATCGTTCTTCTGCTTTGTCTGACCTTATCCTCATAAGA 600
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 CCAAGTGGCGCGCCAAGGGCTGTGTTAGCTCTCCGAGGAACACTGCTTCAGAAGCCCACC 660
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 ATCAAGAGAGACCTACAAGATGATCTTCGCTTCCTGGTGTGGGAGAGCTTAAAAGGATCA 720
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 GTCAGATATATTGGCGCTTTAGAAGCACTGAAGACAGCAGTTGAGAGGTTTGGTAGCGCT 780
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 AATGTCAGTGTTGCTGGGCACTCCTTGGGAGCTGGATTTGCTCTTCAGGTTTGCAAAGAG 840
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 CTCGCTAAGCAAGGAGTCTTCGTGGAGTGTCATCTGTTCAATCCACCTTCTGTTTCACTT 900
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 GCCATGGGTGTAAGGAGTATGAGTGAGAAGGCCAGCTACCTGTGGAAAAAAGTTAAGGCT 960
consensus_5124#1 -------------------------------------------------------GGACG 5
* *
consensus_5124#0 AGTCTACCACTGACTGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAG 1020
consensus_5124#1 AGACAA-----GGGGGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAG 60
** * * * *********************************************
consensus_5124#0 AAGAAATTGCGTGCTGACAAGAAATGGGTGCCACATTTATATGTAAACAACAGTGACTAC 1080
consensus_5124#1 AAGAAATTGCGTGCTGACAAGAGATGGGTGCCACATTTATATGTAAACAACAGTGACTAC 120
********************** *************************************
consensus_5124#0 ATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGAT 1140
consensus_5124#1 ATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGAT 180
************************************************************
consensus_5124#0 GGTGCTTCAGATGAGCAGCAGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTC 1200
consensus_5124#1 GGTGCTTCAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTC 240
******************* ****************************************
consensus_5124#0 GCGAAGCTTTTTGTGACATCGAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAG 1260
consensus_5124#1 GCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAG 300
******************** ***************************************
consensus_5124#0 CAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATAC 1320
consensus_5124#1 CAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATAC 360
************************************************************
consensus_5124#0 AGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAA 1380
consensus_5124#1 AGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAA 420
************************************************************
consensus_5124#0 CTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTC 1440
consensus_5124#1 CTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTC 480
************************************************************
consensus_5124#0 TATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTAT--TATACAGTAAAATAT 1498
consensus_5124#1 TATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATAT 540
******************************************* ***************
consensus_5124#0 AATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCTGTCAGA 1558
consensus_5124#1 AATAAACGGACATGTGCTGATAAATACATTGA---------------------------- 572
********************************
consensus_5124#0 GGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACC 1618
consensus_5124#1 ------------------------------------------------------------
consensus_5124#0 GATTAGCATCCATGTTTATGATTATGATCTTTTGATGGTGCAAAAAAAAAAAAAAA 1674
consensus_5124#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||