Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5126 cluster # 5126       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5126#0 length = 2198 sequences # 3  

consensusID : consensus_5126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2198
fasta sequence
                              [CCACCGCCACCGCCGGCGACGGCGACGGCGACGGCATGGCTGCGGCGCCGCCTCCGGCGAAGCGGCAGCGTTGTCATGCGGTGGAGGAGCTCCCGTCGCCGAGGAGGGGGCTCCTGCGGCAGAGCGTGCTCGTCGTCGTCTTCCTCAGGCGCGCCATGCTCCTCGCCTGGGGGGGCAGGAAGGCGGACGACGACGACGGCGGCGGCGGCGCGGCGGTCGGCGTCTCCCGGATTGGTGGCGTGGTGAGAGATGAACTCCGTCGCTGTCTTGGACCAATTGCGAGGAGCTTCTCGCTGCAGTTTAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGAATCTCAACCATAAAGTGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGCACCCAATGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAGACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTTACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATGGTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTGAGGGAAATTTTCCGTATAATAGCATGGAGAGTTGGACTACTAAGGAGTTCAACGAACACAGAGCTTGTGGCCGGGATGAAAGAGGCGATGTGTTGGCAGGTGAACGCACTGTCCAGCTGATCAATGGAGAGGCCTCTCTTGGTGCCATCAAATTCAGAGAAGGGTCATGCAAGGCCCGCAAGGGTAAGTTCATCCTTGCAGCAAGAGTTTGTGACAGTGCAAGAACTGGTGTTCATGTTCAAGAGGCTGTCATGACGCCTGTGGTTGTGCAGGATCGCAGAAATAAATCAAATGAAAAGAGTCATCCTCCAAAGCTGGACGACAAGGTTCATCGCTTGGAGGAAATTGCAATTAATGGAATATACTGCAAGAGGCTTGTGGAGAAGGGCATAAAAACTGTGAAAGACTTCTTAAAGGCTCTAAACAAGGATCCTGATAACTTGGCCAATATTCTCCACATGAAGAAAGGATCCAAAGCCTGGGAGAAAATGGTGACACATGCCAGGGACTGCAGCCTCGAAGGCAAGCCCGAGCTGAAATCGTATCCCGTTGCTCAGACAAACGTGGTGCTCATCTTCGATTGCGTGAATTCTCTTGTTGGGGCATGGTTTGGTGGCAGTTACATTGCATCTGACAGCCTCAGTTCAGCTCAGCAGGTCATAGTGGACAAGTTGAAAGGGGAAGCATATCAACTATTAGATCAGCTTCCTTTTGATTATATAATGGAAGGCGGGTTTCCAATACTGAATCCTATGAATGCGAATGCCGATTATCGAGCTCAAGGTACTGAAGCAGTTGGGGGCTTGGATCATGCTCAGATTGATCCATCATTTGCAAATGCAAACTATCAAGATCAAAGTACTGCACAAGCTGGTCAGGAGCAATTCTCCTCTGCTGCTGTAGCTGGTTGGTGCCAGGATTCAATTGCGCAACCTAGCTCTTCTCACCAGACAAATCATGTAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTTGTGATTACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAGGGGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGATCCAGGAT-CATCAGCTCAGGTGAACATGCAGAGCCAGGGGCACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGGGATAAAGCAGAAATGTAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCAATTGTTGAATTGTCACCTGTATTGTAATTTGTAATCCTCTCACTTTTTGGTCTCTGAGCAGCTTAGACTATTGCTCTGTACTTCACCCATTGATGTGAAACTCTGGCTGAAAGAGTGGCGCTAATCTAAATGTTAGATTCCCAAGATTTTCCTAAAAGTTATATTTCCAAAAA]

[+] EMBL AK110372             [CCACCGCCACCGCCGGCGACGGCGACGGCGACGGCATGGCTGCGGCGCCGCCTCCGGCGAAGCGGCAGCGTTGTCATGCGGTGGAGGAGCTCCCGTCGCCGAGGAGGGGGCTCCTGCGGCAGAGCGTGCTCGTCGTCGTCTTCCTCAGGCGCGCCATGCTCCTCGCCTGGGGGGGCAGGAAGGCGGACGACGACGACGGCGGCGGCGGCGCGGCGGTCGGCGTCTCCCGGATTGGTGGCGTGGTGAGAGATGAACTCCGTCGCTGTCTTGGACCAATTGCGAGGAGCTTCTCGCTGCAGTTTAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGAATCTCAACCATAAAGTGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGCACCCAATGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAGACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTTACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATGGTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTGAGGGAAATTTTCCGTATAATAGCATGGAGAGTTGGACTACTAAGGAGTTCAACGAACACAGAGCTTGTGGCCGGGATGAAAGAGGCGATGTGTTGGCAGGTGAACGCACTGTCCAGCTGATCAATGGAGAGGCCTCTCTTGGTGCCATCAAATTCAGAGAAGGGTCATGCAAGGCCCGCAAGGGTAAGTTCATCCTTGCAGCAAGAGTTTGTGACAGTGCAAGAACTGGTGTTCATGTTCAAGAGGCTGTCATGACGCCTGTGGTTGTGCAGGATCGCAGAAATAAATCAAATGAAAAGAGTCATCCTCCAAAGCTGGACGACAAGGTTCATCGCTTGGAGGAAATTGCAATTAATGGAATATACTGCAAGAGGCTTGTGGAGAAGGGCATAAAAACTGTGAAAGACTTCTTAAAGGCTCTAAACAAGGATCCTGATAACTTGGCCAATATTCTCCACATGAAGAAAGGATCCAAAGCCTGGGAGAAAATGGTGACACATGCCAGGGACTGCAGCCTCGAAGGCAAGCCCGAGCTGAAATCGTATCCCGTTGCTCAGACAAACGTGGTGCTCATCTTCGATTGCGTGAATTCTCTTGTTGGGGCATGGTTTGGTGGCAGTTACATTGCATCTGACAGCCTCAGTTCAGCTCAGCAGGTCATAGTGGACAAGTTGAAAGGGGAAGCATATCAACTATTAGATCAGCTTCCTTTTGATTATATAATGGAAGGCGGGTTTCCAATACTGAATCCTATGAATGCGAATGCCGATTATCGAGCTCAAGGTACTGAAGCAGTTGGGGGCTTGGATCATGCTCAGATTGATCCATCATTTGCAAATGCAAACTATCAAGATCAAAGTACTGCACAAGCTGGTCAGGAGCAATTCTCCTCTGCTGCTGTAGCTGGTTGGTGCCAGGATTCAATTGCGCAACCTAGCTCTTCTCACCAGACAAATCATGTAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTTGTGATTACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAGGGGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGATCCAGGAT CATCAGCTCAGGTGAACATGCAGAGCCAGGGGCACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGGGATAAAGCAGAAATGTAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCAATTGTTGAATTGTCACCTGTATTGTAATTTGTAATCCTCTCACTTTTTGGTCTCTGAGCAGCTTAGACTATTGCTCTGTACTTCACCCATTGATGTGAAACTCTGGCTGAAAGAGTGGCGCTAATCTAAATGTTAGATTCCCAAGATTTT                       ]
[+] EMBL AU065810             [                                                                                                                                                                                                                                                                                                             TAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGAATCTCAACCATAAAGTGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGCACCCAATGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAGACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTTACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATGGTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTGAGGGAAATTTTCCGTATAATAGCATGGAGAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU088661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGGATCCATCAGCTCAGGTGAACATGCAGAGCCAGGGGCACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATNCCATGGAAACAACTGGGGATAAAGCAGAAATGTAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCAATTG TGAATTGTCACCTGTATTGTAATTTGTAATCCTCTCNCTTTTTGGTCTCTGAGCAGCTTAGACTATTGCTCTGTACTTCACCCATTGATGTGAAACTCTGGCTGAAAGAGTGGCGCTAATCTAAATGTTAGATTTCCAAGATTTTCCTAAAAGTTATATTTCCAAAAA]


>consensus_5126#0 CCACCGCCACCGCCGGCGACGGCGACGGCGACGGCATGGCTGCGGCGCCGCCTCCGGCGA AGCGGCAGCGTTGTCATGCGGTGGAGGAGCTCCCGTCGCCGAGGAGGGGGCTCCTGCGGC AGAGCGTGCTCGTCGTCGTCTTCCTCAGGCGCGCCATGCTCCTCGCCTGGGGGGGCAGGA AGGCGGACGACGACGACGGCGGCGGCGGCGCGGCGGTCGGCGTCTCCCGGATTGGTGGCG TGGTGAGAGATGAACTCCGTCGCTGTCTTGGACCAATTGCGAGGAGCTTCTCGCTGCAGT TTAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGA ATCTCAACCATAAAGTGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGC ACCCAATGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAG ACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTT ACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATG GTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTG AGGGAAATTTTCCGTATAATAGCATGGAGAGTTGGACTACTAAGGAGTTCAACGAACACA GAGCTTGTGGCCGGGATGAAAGAGGCGATGTGTTGGCAGGTGAACGCACTGTCCAGCTGA TCAATGGAGAGGCCTCTCTTGGTGCCATCAAATTCAGAGAAGGGTCATGCAAGGCCCGCA AGGGTAAGTTCATCCTTGCAGCAAGAGTTTGTGACAGTGCAAGAACTGGTGTTCATGTTC AAGAGGCTGTCATGACGCCTGTGGTTGTGCAGGATCGCAGAAATAAATCAAATGAAAAGA GTCATCCTCCAAAGCTGGACGACAAGGTTCATCGCTTGGAGGAAATTGCAATTAATGGAA TATACTGCAAGAGGCTTGTGGAGAAGGGCATAAAAACTGTGAAAGACTTCTTAAAGGCTC TAAACAAGGATCCTGATAACTTGGCCAATATTCTCCACATGAAGAAAGGATCCAAAGCCT GGGAGAAAATGGTGACACATGCCAGGGACTGCAGCCTCGAAGGCAAGCCCGAGCTGAAAT CGTATCCCGTTGCTCAGACAAACGTGGTGCTCATCTTCGATTGCGTGAATTCTCTTGTTG GGGCATGGTTTGGTGGCAGTTACATTGCATCTGACAGCCTCAGTTCAGCTCAGCAGGTCA TAGTGGACAAGTTGAAAGGGGAAGCATATCAACTATTAGATCAGCTTCCTTTTGATTATA TAATGGAAGGCGGGTTTCCAATACTGAATCCTATGAATGCGAATGCCGATTATCGAGCTC AAGGTACTGAAGCAGTTGGGGGCTTGGATCATGCTCAGATTGATCCATCATTTGCAAATG CAAACTATCAAGATCAAAGTACTGCACAAGCTGGTCAGGAGCAATTCTCCTCTGCTGCTG TAGCTGGTTGGTGCCAGGATTCAATTGCGCAACCTAGCTCTTCTCACCAGACAAATCATG TAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTT GTGATTACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAGG GGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGC CATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGATCCAGGATCATCAGCTCAGGTGA ACATGCAGAGCCAGGGGCACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAA CACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGGGATAAAGCAGAAATG TAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCAATTGTTGAATTGTCA CCTGTATTGTAATTTGTAATCCTCTCACTTTTTGGTCTCTGAGCAGCTTAGACTATTGCT CTGTACTTCACCCATTGATGTGAAACTCTGGCTGAAAGAGTGGCGCTAATCTAAATGTTA GATTCCCAAGATTTTCCTAAAAGTTATATTTCCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)