These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1906 fasta sequence [TCACGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGAGCACGCGTCGATCGGTTGAAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAGGAAAAAAAGCAAGTGGAGGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACGCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACTAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGATGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTGTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCAGGGAAATGACTGAAAGCATATCATATTTATGCACAAGAAAAGTGAGTCATGGTGGATTAGCAAATCGAGAGAGTTATGTGCTTGACTTGGACTCAAAATTAAAATTGATTAATGTGGCAAGGTATTCAACTGATGGTAGCACAACTCGTGACGATGTCGTGGACTTCTTTGACCTTTTATGCACGGAAGACAGGATTAATGCTTCAGGGAATGGAAATGTGGAGTGGGAAGGATTTGACTACTTGATCAAGTCTAATTCGATGTATAACACCAGGTTCGGCGAGTGGAAACAAGCAAATATTGAACCACCCAATTTTGAAAGACCATTCAGCTGAGAAACTGGCATGTTATTTAAGTATTCATAAGAATGCCCAGGGAATGAATCGAGCATCGTTGACAAATTTTTCCAATGCACTGCTCTGTAAAATACCTGATTACGCTGGGTATACCAGCTTGGAAGAGTATGTCATGAAGTCCTGTGGCTGTGACTTGTGTTATGACACTGTTGCCTGTGTCACCCCTCCCCGCAGAGTTTACATTGACATAATCTATTTCATAAGGCATCTGGTTGAACATGCTGGTGACAGAAAATACAATAAGACTATGTTGCATTGGACTGCTGACGCAATATTTGACAAGATATGTGGGATGTTTCCTGGCTTTATGAGCATGGCCTACTCGGTTCAAGCAGTGAACCCACGGTATTGGTCTAACAACCCGGAGTGGACTAAACTCTTCCGTGAGGCGGAGGAGAACGGCATTGAACTTCCAGATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGATGGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGTTCGTCGTCCTGTGATCCTTGACGAAGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTGATGGTGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGTTGTAAAGCATAAGCTAGCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGATGCGGCATGCAGTCACGAAGACTATGCAGCTTGATATGTATGTCGCAGTATTAATTAGTACTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTATCACTACGTACTCTGCTTCTGTCTCAGTTGAACTTGGACCTTAATTATTAATTAGCTT] [+] EMBL AK070542 [TCACGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGAGCACGCGTCGATCGGTTGAAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAGGAAAAAAAGCAAGTGGAGGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACGCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACTAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGATGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTGTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCAGGGAAATGACTGAAAGCATATCATATTTATGCACAAGAAAAGTGAGTCATGGTGGATTAGCAAATCGAGAGAGTTATGTGCTTGACTTGGACTCAAAATTAAAATTGATTAATGTGGCAAGGTATTCAACTGATGGTAGCACAACTCGTGACGATGTCGTGGACTTCTTTGACCTTTTATGCACGGAAGACAGGATTAATGCTTCAGGGAATGGAAATGTGGAGTGGGAAGGATTTGACTACTTGATCAAGTCTAATTCGATGTATAACACCAGGTTCGGCGAGTGGAAACAAGCAAATATTGAACCACCCAATTTTGAAAGACCATTCAGCTGAGAAACTGGCATGTTATTTAAGTATTCATAAGAATGCCCAGGGAATGAATCGAGCATCGTTGACAAATTTTTCCAATGCACTGCTCTGTAAAATACCTGATTACGCTGGGTATACCAGCTTGGAAGAGTATGTCATGAAGTCCTGTGGCTGTGACTTGTGTTATGACACTGTTGCCTGTGTCACCCCTCCCCGCAGAGTTTACATTGACATAATCTATTTCATAAGGCATCTGGTTGAACATGCTGGTGACAGAAAATACAATAAGACTATGTTGCATTGGACTGCTGACGCAATATTTGACAAGATATGTGGGATGTTTCCTGGCTTTATGAGCATGGCCTACTCGGTTCAAGCAGTGAACCCACGGTATTGGTCTAACAACCCGGAGTGGACTAAACTCTTCCGTGAGGCGGAGGAGAACGGCATTGAACTTCCAGATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGATGGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGTTCGTCGTCCTGTGATCCTTGACGAAGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTGATGGTGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGTTGTAAAGCATAAGCTAGCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGATGCGGCATGCAGTCACGAAGACTATGCAGCTTGATATGTATGTCGCAGTATTAATTAGTACTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTATCACTACGTACTCTGCTTCTGTCTCAGTTGAACTTGGACCTTAATTATTAATTAGCTT] consensusID : consensus_5141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [CGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGNTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCANGTGATTATTTATTGGAAAAAAAAGAAAAAA] [+] EMBL CB097176 [CGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGNTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCANGTGATTATTTATTGG ] [-] EMBL CA760110 [ TCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCAGGTGATTATTTATGGCAAAAAAAAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5141#0 TCACGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGG 60 consensus_5141#1 ---CGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGG 57 ********************************************************* consensus_5141#0 GAGCACGCGTCGATCGGTTGAAGG--------CGCCATGGCTAGTAGAGGAAGTGGAAGT 112 consensus_5141#1 GGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGT 117 * ********************** **************************** consensus_5141#0 GGAAGCGGAAAAGGAAAAGGAAAAAAAGCAAGTGGAGGTACAAGAGGAAAAGGAAGAATG 172 consensus_5141#1 GGAAGCGGAAAAGGA------AAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATG 171 *************** *************** *********************** consensus_5141#0 CCACTAGATGGAGAAATCACTGAAAGAATTAGCACGCTGCGCATGGCAAATACTCCACGC 232 consensus_5141#1 CCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGC 231 *********************************** ************************ consensus_5141#0 ACTGAACGTCTTAGAAGAAATTTGGCATCACTAGTGTTACGCCAGGCGCTTCAGGGTGTA 292 consensus_5141#1 ACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTA 291 ******************************* **************************** consensus_5141#0 TATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGAT 352 consensus_5141#1 TATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGAT 351 ************************************************************ consensus_5141#0 GGATGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGG 412 consensus_5141#1 GGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGG 411 ** ********************************************************* consensus_5141#0 TTCATTCAACATGATGCAACATTTGTTGTCATGGATGAAGATTATGAAACTGGAAGGATT 472 consensus_5141#1 TTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATT 471 ************************ *********************************** consensus_5141#0 ATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCA 532 consensus_5141#1 ATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCA 531 ************************************************************ consensus_5141#0 GATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCT 592 consensus_5141#1 GATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGNTATTGGATATGAGCCT 591 ******************************************* **************** consensus_5141#0 TTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATT 652 consensus_5141#1 TTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATT 651 ************************************************************ consensus_5141#0 TCAGCATACTGGAGAGATAAAATCAGGGAAATGACTGAAAGCATATCATATTTATGCACA 712 consensus_5141#1 TCAGCATACTGGAGAGATAAAATCANGTGATTATTTATTGGAAAAAAAAGAAAAAA---- 707 ************************* * * * * * * * * * consensus_5141#0 AGAAAAGTGAGTCATGGTGGATTAGCAAATCGAGAGAGTTATGTGCTTGACTTGGACTCA 772 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 AAATTAAAATTGATTAATGTGGCAAGGTATTCAACTGATGGTAGCACAACTCGTGACGAT 832 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 GTCGTGGACTTCTTTGACCTTTTATGCACGGAAGACAGGATTAATGCTTCAGGGAATGGA 892 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 AATGTGGAGTGGGAAGGATTTGACTACTTGATCAAGTCTAATTCGATGTATAACACCAGG 952 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 TTCGGCGAGTGGAAACAAGCAAATATTGAACCACCCAATTTTGAAAGACCATTCAGCTGA 1012 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 GAAACTGGCATGTTATTTAAGTATTCATAAGAATGCCCAGGGAATGAATCGAGCATCGTT 1072 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 GACAAATTTTTCCAATGCACTGCTCTGTAAAATACCTGATTACGCTGGGTATACCAGCTT 1132 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 GGAAGAGTATGTCATGAAGTCCTGTGGCTGTGACTTGTGTTATGACACTGTTGCCTGTGT 1192 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 CACCCCTCCCCGCAGAGTTTACATTGACATAATCTATTTCATAAGGCATCTGGTTGAACA 1252 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 TGCTGGTGACAGAAAATACAATAAGACTATGTTGCATTGGACTGCTGACGCAATATTTGA 1312 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 CAAGATATGTGGGATGTTTCCTGGCTTTATGAGCATGGCCTACTCGGTTCAAGCAGTGAA 1372 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 CCCACGGTATTGGTCTAACAACCCGGAGTGGACTAAACTCTTCCGTGAGGCGGAGGAGAA 1432 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 CGGCATTGAACTTCCAGATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGAT 1492 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 GGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGTTCGTCGTCCTGTGATCCTTGACGA 1552 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 AGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTGATGG 1612 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 TGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGT 1672 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 TGTAAAGCATAAGCTAGCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGA 1732 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 TGCGGCATGCAGTCACGAAGACTATGCAGCTTGATATGTATGTCGCAGTATTAATTAGTA 1792 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 CTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTATCAC 1852 consensus_5141#1 ------------------------------------------------------------ consensus_5141#0 TACGTACTCTGCTTCTGTCTCAGTTGAACTTGGACCTTAATTATTAATTAGCTT 1906 consensus_5141#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||