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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1906 fasta sequence
[TCACGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGAGCACGCGTCGATCGGTTGAAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAGGAAAAAAAGCAAGTGGAGGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACGCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACTAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGATGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTGTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCAGGGAAATGACTGAAAGCATATCATATTTATGCACAAGAAAAGTGAGTCATGGTGGATTAGCAAATCGAGAGAGTTATGTGCTTGACTTGGACTCAAAATTAAAATTGATTAATGTGGCAAGGTATTCAACTGATGGTAGCACAACTCGTGACGATGTCGTGGACTTCTTTGACCTTTTATGCACGGAAGACAGGATTAATGCTTCAGGGAATGGAAATGTGGAGTGGGAAGGATTTGACTACTTGATCAAGTCTAATTCGATGTATAACACCAGGTTCGGCGAGTGGAAACAAGCAAATATTGAACCACCCAATTTTGAAAGACCATTCAGCTGAGAAACTGGCATGTTATTTAAGTATTCATAAGAATGCCCAGGGAATGAATCGAGCATCGTTGACAAATTTTTCCAATGCACTGCTCTGTAAAATACCTGATTACGCTGGGTATACCAGCTTGGAAGAGTATGTCATGAAGTCCTGTGGCTGTGACTTGTGTTATGACACTGTTGCCTGTGTCACCCCTCCCCGCAGAGTTTACATTGACATAATCTATTTCATAAGGCATCTGGTTGAACATGCTGGTGACAGAAAATACAATAAGACTATGTTGCATTGGACTGCTGACGCAATATTTGACAAGATATGTGGGATGTTTCCTGGCTTTATGAGCATGGCCTACTCGGTTCAAGCAGTGAACCCACGGTATTGGTCTAACAACCCGGAGTGGACTAAACTCTTCCGTGAGGCGGAGGAGAACGGCATTGAACTTCCAGATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGATGGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGTTCGTCGTCCTGTGATCCTTGACGAAGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTGATGGTGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGTTGTAAAGCATAAGCTAGCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGATGCGGCATGCAGTCACGAAGACTATGCAGCTTGATATGTATGTCGCAGTATTAATTAGTACTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTATCACTACGTACTCTGCTTCTGTCTCAGTTGAACTTGGACCTTAATTATTAATTAGCTT]
[+] EMBL AK070542 [TCACGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGAGCACGCGTCGATCGGTTGAAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAGGAAAAAAAGCAAGTGGAGGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACGCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACTAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGATGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTGTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCAGGGAAATGACTGAAAGCATATCATATTTATGCACAAGAAAAGTGAGTCATGGTGGATTAGCAAATCGAGAGAGTTATGTGCTTGACTTGGACTCAAAATTAAAATTGATTAATGTGGCAAGGTATTCAACTGATGGTAGCACAACTCGTGACGATGTCGTGGACTTCTTTGACCTTTTATGCACGGAAGACAGGATTAATGCTTCAGGGAATGGAAATGTGGAGTGGGAAGGATTTGACTACTTGATCAAGTCTAATTCGATGTATAACACCAGGTTCGGCGAGTGGAAACAAGCAAATATTGAACCACCCAATTTTGAAAGACCATTCAGCTGAGAAACTGGCATGTTATTTAAGTATTCATAAGAATGCCCAGGGAATGAATCGAGCATCGTTGACAAATTTTTCCAATGCACTGCTCTGTAAAATACCTGATTACGCTGGGTATACCAGCTTGGAAGAGTATGTCATGAAGTCCTGTGGCTGTGACTTGTGTTATGACACTGTTGCCTGTGTCACCCCTCCCCGCAGAGTTTACATTGACATAATCTATTTCATAAGGCATCTGGTTGAACATGCTGGTGACAGAAAATACAATAAGACTATGTTGCATTGGACTGCTGACGCAATATTTGACAAGATATGTGGGATGTTTCCTGGCTTTATGAGCATGGCCTACTCGGTTCAAGCAGTGAACCCACGGTATTGGTCTAACAACCCGGAGTGGACTAAACTCTTCCGTGAGGCGGAGGAGAACGGCATTGAACTTCCAGATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGATGGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGTTCGTCGTCCTGTGATCCTTGACGAAGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTGATGGTGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGTTGTAAAGCATAAGCTAGCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGATGCGGCATGCAGTCACGAAGACTATGCAGCTTGATATGTATGTCGCAGTATTAATTAGTACTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTATCACTACGTACTCTGCTTCTGTCTCAGTTGAACTTGGACCTTAATTATTAATTAGCTT]
consensusID : consensus_5141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence
[CGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGNTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCANGTGATTATTTATTGGAAAAAAAAGAAAAAA]
[+] EMBL CB097176 [CGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGNTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCANGTGATTATTTATTGG ]
[-] EMBL CA760110 [ TCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGGGGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGTGGAAGCGGAAAAGGAAAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATGCCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGCACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTATATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGATGGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGGTTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATTATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCAGATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCTTTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATTTCAGCATACTGGAGAGATAAAATCAGGTGATTATTTATGGCAAAAAAAAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5141#0 TCACGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGG 60
consensus_5141#1 ---CGCCCTCACCCCATTTGTTCAGCAGCACATCGATCGCTCATTCGCTCCCTTCCAGGG 57
*********************************************************
consensus_5141#0 GAGCACGCGTCGATCGGTTGAAGG--------CGCCATGGCTAGTAGAGGAAGTGGAAGT 112
consensus_5141#1 GGGCACGCGTCGATCGGTTGAAGGTTTGCAGGCGCCATGGCTAGTAGAGGAAGTGGAAGT 117
* ********************** ****************************
consensus_5141#0 GGAAGCGGAAAAGGAAAAGGAAAAAAAGCAAGTGGAGGTACAAGAGGAAAAGGAAGAATG 172
consensus_5141#1 GGAAGCGGAAAAGGA------AAAAAAGCAAGTGGAAGTACAAGAGGAAAAGGAAGAATG 171
*************** *************** ***********************
consensus_5141#0 CCACTAGATGGAGAAATCACTGAAAGAATTAGCACGCTGCGCATGGCAAATACTCCACGC 232
consensus_5141#1 CCACTAGATGGAGAAATCACTGAAAGAATTAGCACTCTGCGCATGGCAAATACTCCACGC 231
*********************************** ************************
consensus_5141#0 ACTGAACGTCTTAGAAGAAATTTGGCATCACTAGTGTTACGCCAGGCGCTTCAGGGTGTA 292
consensus_5141#1 ACTGAACGTCTTAGAAGAAATTTGGCATCACCAGTGTTACGCCAGGCGCTTCAGGGTGTA 291
******************************* ****************************
consensus_5141#0 TATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGAT 352
consensus_5141#1 TATTCGGAAATTCTCGGCGGGTATATCCAATCATATGAGTTGGACTATCAGGATCAGGAT 351
************************************************************
consensus_5141#0 GGATGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGG 412
consensus_5141#1 GGCTGCTCGTTTGTTCAAGGTAGAATTTTTATGGAGTCACCACGAAGTGGAGAAGAAGGG 411
** *********************************************************
consensus_5141#0 TTCATTCAACATGATGCAACATTTGTTGTCATGGATGAAGATTATGAAACTGGAAGGATT 472
consensus_5141#1 TTCATTCAACATGATGCAACATTTTTTGTCATGGATGAAGATTATGAAACTGGAAGGATT 471
************************ ***********************************
consensus_5141#0 ATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCA 532
consensus_5141#1 ATGGCCCAAAAGATCTATGATACCACTATCAAGTTTCATGGATACAACGATGTCATTGCA 531
************************************************************
consensus_5141#0 GATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGTTATTGGATATGAGCCT 592
consensus_5141#1 GATATCTATCTAGTTGCCTACTGTGAAACACTTGGTAAATGGGNTATTGGATATGAGCCT 591
******************************************* ****************
consensus_5141#0 TTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATT 652
consensus_5141#1 TTTTGCCAGTACTGGCTTGAAAGTACCCTTGCACCATTTTATGAGAGTGATACTACAATT 651
************************************************************
consensus_5141#0 TCAGCATACTGGAGAGATAAAATCAGGGAAATGACTGAAAGCATATCATATTTATGCACA 712
consensus_5141#1 TCAGCATACTGGAGAGATAAAATCANGTGATTATTTATTGGAAAAAAAAGAAAAAA---- 707
************************* * * * * * * * * *
consensus_5141#0 AGAAAAGTGAGTCATGGTGGATTAGCAAATCGAGAGAGTTATGTGCTTGACTTGGACTCA 772
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 AAATTAAAATTGATTAATGTGGCAAGGTATTCAACTGATGGTAGCACAACTCGTGACGAT 832
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 GTCGTGGACTTCTTTGACCTTTTATGCACGGAAGACAGGATTAATGCTTCAGGGAATGGA 892
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 AATGTGGAGTGGGAAGGATTTGACTACTTGATCAAGTCTAATTCGATGTATAACACCAGG 952
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 TTCGGCGAGTGGAAACAAGCAAATATTGAACCACCCAATTTTGAAAGACCATTCAGCTGA 1012
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 GAAACTGGCATGTTATTTAAGTATTCATAAGAATGCCCAGGGAATGAATCGAGCATCGTT 1072
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 GACAAATTTTTCCAATGCACTGCTCTGTAAAATACCTGATTACGCTGGGTATACCAGCTT 1132
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 GGAAGAGTATGTCATGAAGTCCTGTGGCTGTGACTTGTGTTATGACACTGTTGCCTGTGT 1192
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 CACCCCTCCCCGCAGAGTTTACATTGACATAATCTATTTCATAAGGCATCTGGTTGAACA 1252
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 TGCTGGTGACAGAAAATACAATAAGACTATGTTGCATTGGACTGCTGACGCAATATTTGA 1312
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 CAAGATATGTGGGATGTTTCCTGGCTTTATGAGCATGGCCTACTCGGTTCAAGCAGTGAA 1372
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 CCCACGGTATTGGTCTAACAACCCGGAGTGGACTAAACTCTTCCGTGAGGCGGAGGAGAA 1432
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 CGGCATTGAACTTCCAGATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGAT 1492
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 GGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGTTCGTCGTCCTGTGATCCTTGACGA 1552
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 AGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTGATGG 1612
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 TGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGT 1672
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 TGTAAAGCATAAGCTAGCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGA 1732
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 TGCGGCATGCAGTCACGAAGACTATGCAGCTTGATATGTATGTCGCAGTATTAATTAGTA 1792
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 CTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTATCAC 1852
consensus_5141#1 ------------------------------------------------------------
consensus_5141#0 TACGTACTCTGCTTCTGTCTCAGTTGAACTTGGACCTTAATTATTAATTAGCTT 1906
consensus_5141#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||