These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1471 fasta sequence [AGGCGGCGGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGCATCGGCTCCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGTACTACGAGCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCGTGCCGCTCCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTCCCTGTCGGCTATCCAGCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATAGTGATGGTGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCCGATGTTTAGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATAGCAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTCATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTTTTGTGCCTGCATGGGTTTGAGATTACTGTAACTTATAATTGATATTTAAAGGGTGAGAATAAAGTGATATATGGTTGAAGCATCTAAAAAGA] [+] EMBL AK107306 [AGGCGGCGGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGCATCGGCTCCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGTACTACGAGCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCGTGCCGCTCCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTCCCTGTCGGCTATCCAGCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATAGTGATGGTGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCCGATGTTTAGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATAGCAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTCATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAAC ] [-] EMBL CB653745 [ CAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTTTTGTGCCTGCATGGGTTTGAGATTACTGTAACTTATAATTGATATTTAAAGGGTGAGAATAAAGTGATATATGGTTGAAGCATCTAAAAAGA] consensusID : consensus_5144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTAAAAAAAA] [-] EMBL CA760104 [TTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5144#0 AGGCGGCGGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGG 60 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 AGGAGGAGGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGC 120 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 ATCGGCTCCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGT 180 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 ACTACGAGCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCG 240 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 TGCCGCTCCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTCCCTGTCGG 300 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 CTATCCAGCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATA 360 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 GTGATGGTGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCC 420 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 GATGTTTAGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGT 480 consensus_5144#1 ---------TTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGT 51 *************************************************** consensus_5144#0 CTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAA 540 consensus_5144#1 CTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAA 111 ************************************************************ consensus_5144#0 GACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACAT 600 consensus_5144#1 GACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACAT 171 ************************************************************ consensus_5144#0 ATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACA 660 consensus_5144#1 ATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACA 231 ************************************************************ consensus_5144#0 GGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCAC 720 consensus_5144#1 GGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCAC 291 ************************************************************ consensus_5144#0 TATCTACACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATA 780 consensus_5144#1 TATCTACACCAGCGGAAGGTACACTAA--------------------------------- 318 *************************** consensus_5144#0 GCAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACA 840 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 AGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGC 900 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 TCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCT 960 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 TCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTC 1020 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 AGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCAC 1080 consensus_5144#1 -----------------TTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCAC 361 ******************************************* consensus_5144#0 TGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTCATAGCCCCAT 1140 consensus_5144#1 TGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCAT 421 ************************************************* ********** consensus_5144#0 ATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTA 1200 consensus_5144#1 ATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTA 481 ************************************************************ consensus_5144#0 GTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTA 1260 consensus_5144#1 GTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTA 541 ************************************************************ consensus_5144#0 TGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATAT 1320 consensus_5144#1 TGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATAT 601 ************************************************************ consensus_5144#0 AGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTTT 1380 consensus_5144#1 AGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTAA 661 ********************************************************** consensus_5144#0 TGTGCCTGCATGGGTTTGAGATTACTGTAACTTATAATTGATATTTAAAGGGTGAGAATA 1440 consensus_5144#1 AAAAAA------------------------------------------------------ 667 consensus_5144#0 AAGTGATATATGGTTGAAGCATCTAAAAAGA 1471 consensus_5144#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||