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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1147 fasta sequence
[GTGGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCGACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTCCTGCTCCCGCGCGTCGCGCTG-TCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCGCCGGCGCCGCGCCACGTCGACCTCGCCGAGCTGCTCTCCCTCGCCGGGCCGTACGGCACGTTCCTGGGCTACCTCACCAAGACGGGCGTGATCACGACGTTCCAGAGCCAGGCCAACGACACCGCCGCCGGCGCCCCCGGCGTCACCGTGTTCGCCCCCGAGGACTCGGCGTTCGCGGCCGTCGGCGGCGGCGCCGCGCTGTCCAACCTCACCGCCGACCAGCTCCGCACGCTCATGCTGTGCCACGGGGTGCCCCGGTACCACCCGCTCTCGTCGTTCTCGGCGCTGGCCGCGTCGGGCCCGGCGCCCACGTTCGCCGGCGGGCAGCAGTACGCCGTGAACGTCACTGACGCCGCCGGGACGGTCCGCATCCAGTCCGGCTGGGCCACCGCGAAGCTCGTCAGCAGCGTGTACTCGACGTCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGATCTTCCCGACCGCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGACATATGCATGTATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAAT]
[+] EMBL AK110545 [GTGGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCGACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTCCTGCTCCCGCGCGTCGCGCTG TCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCGCCGGCGCCGCGCCACGTCGACCTCGCCGAGCTGCTCTCCCTCGCCGGGCCGTACGGCACGTTCCTGGGCTACCTCACCAAGACGGGCGTGATCACGACGTTCCAGAGCCAGGCCAACGACACCGCCGCCGGCGCCCCCGGCGTCACCGTGTTCGCCCCCGAGGACTCGGCGTTCGCGGCCGTCGGCGGCGGCGCCGCGCTGTCCAACCTCACCGCCGACCAGCTCCGCACGCTCATGCTGTGCCACGGGGTGCCCCGGTACCACCCGCTCTCGTCGTTCTCGGCGCTGGCCGCGTCGGGCCCGGCGCCCACGTTCGCCGGCGGGCAGCAGTACGCCGTGAACGTCACTGACGCCGCCGGGACGGTCCGCATCCAGTCCGGCTGGGCCACCGCGAAGCTCGTCAGCAGCGTGTACTCGACGTCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGATCTTCCCGACCGCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGACATATGCATGTATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAAT]
[+] EMBL OSR24441A [ ccGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCGACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTCCTGCTCCCGCGCGTCG GCTGATCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCGCCGGCG CGCGCCACGTCGACCTCGCCGAGCTGC ]
consensusID : consensus_5146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[GTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTCAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAATAAGATTCTACAAAAAA]
[+] EMBL AU173368 [GTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTCAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAATAAGATTCTACAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5146#0 GTGGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCG 60
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 ACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTC 120
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 CTGCTCCCGCGCGTCGCGCTGTCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCG 180
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 CCGGCGCCGCGCCACGTCGACCTCGCCGAGCTGCTCTCCCTCGCCGGGCCGTACGGCACG 240
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 TTCCTGGGCTACCTCACCAAGACGGGCGTGATCACGACGTTCCAGAGCCAGGCCAACGAC 300
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 ACCGCCGCCGGCGCCCCCGGCGTCACCGTGTTCGCCCCCGAGGACTCGGCGTTCGCGGCC 360
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 GTCGGCGGCGGCGCCGCGCTGTCCAACCTCACCGCCGACCAGCTCCGCACGCTCATGCTG 420
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 TGCCACGGGGTGCCCCGGTACCACCCGCTCTCGTCGTTCTCGGCGCTGGCCGCGTCGGGC 480
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 CCGGCGCCCACGTTCGCCGGCGGGCAGCAGTACGCCGTGAACGTCACTGACGCCGCCGGG 540
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 ACGGTCCGCATCCAGTCCGGCTGGGCCACCGCGAAGCTCGTCAGCAGCGTGTACTCGACG 600
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 TCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGATCTTCCCGACC 660
consensus_5146#1 ------------------------------------------------------------
consensus_5146#0 GCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCG 720
consensus_5146#1 ---------GTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCG 51
***************************************************
consensus_5146#0 AACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGC 780
consensus_5146#1 AACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTCAAGAGTTCGTCGTGC 111
******************************************** ***************
consensus_5146#0 CGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGAT 840
consensus_5146#1 CGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGAT 171
************************************************************
consensus_5146#0 GATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCG 900
consensus_5146#1 GATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCG 231
************************************************************
consensus_5146#0 TTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGA 960
consensus_5146#1 TTTCATAATGTAATACTTTCTACCATTAAC------------------------------ 261
******************************
consensus_5146#0 CATATGCATGTATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCT 1020
consensus_5146#1 ---------------------------ATTTATATGTATGTGGGCAATGGTAAAAAGTCT 294
*********************************
consensus_5146#0 TACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTC 1080
consensus_5146#1 TACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTC 354
************************************************************
consensus_5146#0 TGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAA 1140
consensus_5146#1 TGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAA 414
************************************************************
consensus_5146#0 ACGAAAT---------------- 1147
consensus_5146#1 ACGAAATAAGATTCTACAAAAAA 437
*******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||