These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1261 fasta sequence [CTCCTCCGCCGCCGCGAACCCGATCTCGATCCCCTCCCATGGCGGCCGCCCTCTCCTCCTCCCGGAGGGCCCTCCACGCCCTCCACCGCCGCCTCCTCCTCCACCCCCTCCCCTCCCGCCACGCTCCCCCCATCCCCCGCCACCACTTCCCCTCTCCTCCCTCCTCCTCCTCCTCCTCCTCCCGCTTCTTCACCACCACGCGCCCCGACGCGAGGCTACTACAGCTGCATGCGCGGCGGCTCGTGGTGGGCGGGGCAAGGTCGTTCGCGGCGGGCGTCGGCGGCGGGGGGTCGTCGAAGCTGGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCTGGGGCGGCCGCTGGACGCGGCCAAGAACGCGGCGGCGAGGTACCGGGAGGCCGTGGGGCTGCAGGTGGAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCAGCACCTTCGTCGGGCTCTCCGAGGGCATGGCCAAGTACGGCTTCCTCGCCCTCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATGTCAGAGCATATGTCATGTCTGGAGGGGGGCCTAAACTCAAGGACTTCAAATTTAGGCTTGGTGGCAAAAGGTGCTTTCTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTT] [+] EMBL AK063678 [CTCCTCCGCCGCCGCGAACCCGATCTCGATCCCCTCCCATGGCGGCCGCCCTCTCCTCCTCCCGGAGGGCCCTCCACGCCCTCCACCGCCGCCTCCTCCTCCACCCCCTCCCCTCCCGCCACGCTCCCCCCATCCCCCGCCACCACTTCCCCTCTCCTCCCTCCTCCTCCTCCTCCTCCTCCCGCTTCTTCACCACCACGCGCCCCGACGCGAGGCTACTACAGCTGCATGCGCGGCGGCTCGTGGTGGGCGGGGCAAGGTCGTTCGCGGCGGGCGTCGGCGGCGGGGGGTCGTCGAAGCTGGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCTGGGGCGGCCGCTGGACGCGGCCAAGAACGCGGCGGCGAGGTACCGGGAGGCCGTGGGGCTGCAGGTGGAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCAGCACCTTCGTCGGGCTCTCCGAGGGCATGGCCAAGTACGGCTTCCTCGCCCTCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATGTCAGAGCATATGTCATGTCTGGAGGGGGGCCTAAACTCAAGGACTTCAAATTTAGGCTTGGTGGCAAAAGGTGCTTTCTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTT] consensusID : consensus_5150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence [CAGGTGCAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCACAGCGTGTGAAGAAAGTAATAATTCTTTTTGCTGCTCCACAACGGATTTACTCTGGAGCTCGCTTAATAAAGGGA] [+] EMBL CB648651 [CAGGTGCAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCACAGCGTGTGAAGAAAGTAATAATTCTTTTTGCTGCTCCACAACG ] [-] EMBL CB648652 [ GCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCGTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTCCGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACACCAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCACAGCGTGTGAAGAAAGTAATAATTCTTTTTGAGGCTCCACAACGGATTTACTCTGGAGCTCGCTTAATAAAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5150#0 CTCCTCCGCCGCCGCGAACCCGATCTCGATCCCCTCCCATGGCGGCCGCCCTCTCCTCCT 60 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 CCCGGAGGGCCCTCCACGCCCTCCACCGCCGCCTCCTCCTCCACCCCCTCCCCTCCCGCC 120 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 ACGCTCCCCCCATCCCCCGCCACCACTTCCCCTCTCCTCCCTCCTCCTCCTCCTCCTCCT 180 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 CCCGCTTCTTCACCACCACGCGCCCCGACGCGAGGCTACTACAGCTGCATGCGCGGCGGC 240 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 TCGTGGTGGGCGGGGCAAGGTCGTTCGCGGCGGGCGTCGGCGGCGGGGGGTCGTCGAAGC 300 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 TGGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCTGGGGCGGCCGCTGGACGCGGCCA 360 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 AGAACGCGGCGGCGAGGTACCGGGAGGCCGTGGGGCTGCAGGTGGAGGCGTTCTGGAGGC 420 consensus_5150#1 --------------------------------------CAGGTGCAGGCGTTCTGGAGGC 22 ****** *************** consensus_5150#0 GCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGG 480 consensus_5150#1 GCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGG 82 ************************************************************ consensus_5150#0 TCATGTTCGGCATCGCCAGCACCTTCGTCGGGCTCTCCGAGGGCATGGCCAAGTACGGCT 540 consensus_5150#1 TCATGTTCGGCATC---------------------------------------------- 96 ************** consensus_5150#0 TCCTCGCCCTCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCA 600 consensus_5150#1 -----------GCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCA 145 ************************************************* consensus_5150#0 CCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAA 660 consensus_5150#1 CCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAA 205 ************************************************************ consensus_5150#0 TCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATGTCAGAGCATATGTCATGTCTG 720 consensus_5150#1 TCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGAT---------------------- 243 ************************************** consensus_5150#0 GAGGGGGGCCTAAACTCAAGGACTTCAAATTTAGGCTTGGTGGCAAAAGGTGCTTTCTGA 780 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 TCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAA 840 consensus_5150#1 -CTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAA 302 *********************************************************** consensus_5150#0 AGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATC 900 consensus_5150#1 AGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATC 362 ************************************************************ consensus_5150#0 AGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTG 960 consensus_5150#1 AGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTG 422 ************************************************************ consensus_5150#0 AGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATG 1020 consensus_5150#1 AGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATG 482 ************************************************************ consensus_5150#0 AAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGG 1080 consensus_5150#1 AAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGG 542 ************************************************************ consensus_5150#0 AAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAA 1140 consensus_5150#1 AAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAA 602 ************************************************************ consensus_5150#0 GGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGAT 1200 consensus_5150#1 GGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGAT 662 ************************************************************ consensus_5150#0 TTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTT 1260 consensus_5150#1 TTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTT 722 ************************************************************ consensus_5150#0 T----------------------------------------------------------- 1261 consensus_5150#1 TCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCAC 782 * consensus_5150#0 ------------------------------------------------------------ consensus_5150#1 AGCGTGTGAAGAAAGTAATAATTCTTTTTGCTGCTCCACAACGGATTTACTCTGGAGCTC 842 consensus_5150#0 -------------- consensus_5150#1 GCTTAATAAAGGGA 856 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||