cluster # 5151

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Oryza sativa
cluster # 5151 cluster # 5151 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5151#0 length = 684 sequences # 2

consensus_5151#1 length = 219 sequences # 1

consensusID : consensus_5151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence

                              [AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGGAAAGAATGAAAATGAAGAACAACA]

[+] EMBL CF337420             [AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAG                                                                                                                                                                                         ]
[+] EMBL AK109211             [          CTCTGCATCAACTGTTTGCTGCCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCCGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGGAAAGAATGAAAATGAAGAACAACA]




>consensus_5151#0
AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAA
GTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCT
GCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGC
GCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCT
CGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGC
CCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGT
CTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCA
GCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAA
TGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTG
GACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGAT
GTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGG
AAAGAATGAAAATGAAGAACAACA

consensusID : consensus_5151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF317959             [CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5151#1
CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGG
CTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGT
CTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5151#0      AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAA 60
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCT 120
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGC 180
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCT 240
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      CGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGC 300
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      CCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGT 360
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      CTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCA 420
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAA 480
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      TGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTG 540
consensus_5151#1      ---------------------------------------CCTCAAGAAAGGGTCCATGGG 21
                                                             *********** ******* *

consensus_5151#0      GACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGAT 600
consensus_5151#1      GCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGAT 81
                      * **** **** ** ** ***** ************* **********************

consensus_5151#0      GTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGG 660
consensus_5151#1      GTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGG 141
                      ** ** *********************** *** ******** *** *** *********

consensus_5151#0      AAAGAATGAAAATGAAGAACAACA------------------------------------ 684
consensus_5151#1      AAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAA 201
                      ******* ***** ** * ** **                                    

consensus_5151#0      ------------------
consensus_5151#1      AAAAAAAAAAAAAAAAAA 219