cluster # 5156

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Oryza sativa
cluster # 5156 cluster # 5156 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5156#0 length = 1606 sequences # 2

consensus_5156#1 length = 226 sequences # 1

consensusID : consensus_5156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1606
fasta sequence

                              [ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGGCGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGCGCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCCGCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGCGCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACCGGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTCGCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGCATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCGCATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTGGTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAATTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGGACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTGGAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTGTTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGATACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTTGTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTTGTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTCACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCATTATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAGACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCTGTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGTTCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGAATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAAGACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCTGAAGGGTGGCCGTCGCCGTCGGAGGCTGAAGAAATCGCTGCCGCCGGCGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT]

[+] EMBL AU172716             [ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGGCGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGCGCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCCGCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGCGCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACCGGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTCGCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGCATCAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK073297             [                  CGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGGCGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGCGCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCCGCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGCGCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACCGCCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTCGCCTCCAACTCCCTCCCGCTCCTCGCCTCCCACGACGCATGGCACCGCCTCCGCAAGGGCATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCGCATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTGGTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAATTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGGACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTGGAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTGTTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGATACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTTGTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTTGTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTCACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCATTATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAGACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCTGTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGTTCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGAATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAAGACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCTGAAGGGTGGCCGTCGCCGTCGGAGGCTGAAGAAATCGCTGCCGCCGGCGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT]




>consensus_5156#0
ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGG
CGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGC
GCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCC
GCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGC
GCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACC
GGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTC
GCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGC
ATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCG
CATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTG
GTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAA
TTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGG
ACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTG
GAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTG
TTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGAT
ACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTT
GTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTT
GTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTC
ACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCAT
TATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAG
ACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCT
GTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGT
TCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGA
ATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAA
GACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCTGAAGGGTGGCCGTCGCCGTCGGA
GGCTGAAGAAATCGCTGCCGCCGGCGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTGTA
TCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGT
AGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT

consensusID : consensus_5156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGAAGNCTAAAAAAATCCCTGCCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAAAAAA]

[+] EMBL AU172717             [GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGAAGNCTAAAAAAATCCCTGCCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAAAAAA]




>consensus_5156#1
GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGAAGNCTAAAAAAATCCCTG
CCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTGTATCTAGACGGGTCAGTG
TAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTA
AAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5156#0      ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGG 60
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      CGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGC 120
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCC 180
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGC 240
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACC 300
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTC 360
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGC 420
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      ATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCG 480
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      CATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTG 540
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAA 600
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      TTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGG 660
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      ACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTG 720
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTG 780
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      TTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGAT 840
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      ACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTT 900
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTT 960
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTC 1020
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      ACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCAT 1080
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      TATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAG 1140
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      ACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCT 1200
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGT 1260
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      TCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGA 1320
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      ATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAA 1380
consensus_5156#1      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCT-GAAGGGTGGCCGTCGCCGTCGG 1439
consensus_5156#1      ------------------GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGA 42
                                        * **  * ** ** *****  **** ** ***** ****** 

consensus_5156#0      AGGCTGAAGAAATCGCTGCCGCCGG-CGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTG 1498
consensus_5156#1      AGNCTAAAAAAATCCCTGCCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTG 102
                      ** ** ** ***** ********** ********************* ************

consensus_5156#0      TATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAA 1558
consensus_5156#1      TATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAA 162
                      ************************************************************

consensus_5156#0      GTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT------------ 1606
consensus_5156#1      GTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAA 222
                      ************************************************            

consensus_5156#0      ----
consensus_5156#1      AAAA 226