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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence
[ACGTTCGTTGAGAGGTCCACGGATTGTGTTAATCTTTTGAAAGAGTTGGAACTGCACAAAAGGCCAGAGGGAAATGATATCCCTTTGTTTGATTTGGAGGGTCTCCAATGCTTAGGCTCAATACTACGCATAGTTTCTCAGAGCAGTACTACCATGGATTTCTCAAATATTTCAATCCAGTGGTTCCGTGTACACCCAAAAGAAAGTAACAAAGAGATTATTTCAGGTGCCACAAGATCAGTATATGCTCCCGAACCACATGACGTTGGACGGTATTTGGAAGCTGAAATTAATTATGGTGGTGAAATTGCTATAGCAAAGACAGCTGGGCCAATAGACCCTGACGCTGGATTGGTCGATTATGTAGAGACACTCGTAAGGAAACGTGAAACTGAGTTCAATGTTGTTGTGCTTCAGTTGAATGGAATTGATCAGCCAAAAGAGTCTGTTCATGTTCTCAATATTGGAAAATTGAGGATGAGGCTTTCTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTCGTCATCAATGCAGCTATGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTCTCAGGCGATGTTCTGGCGGCCGAGGAATGACCTCAGCATGGTCCTGGCCTTCGAAACGACGAGAGAACGCAACACCGCAATCATGCTCACCCGGCGATTCGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGCGACAAGACTCCATGGTGAAGAAACGCGAGCGCGCCACCACCGGTGCTCATCATCCTCTGATCCTCCGCAACTTCAAACCCCGTGCTGCGGTTGTATGTACATTTTCTGGTGCACATTGTGTTTTGCATCATGCCCTGTTTGTCAGTTAGTATGCGGTTCTTCCTTTGTGATGGTTCTTCTGAAAGGCGACGCCTGTGGGCACCGTTTTAGCCGCCTCCGGTTGCCGTCTTTCTCCTCCCCCTGTCAC-CGTGATGCTGATGTTCTTACGCTGCTGCGGCTGTGATTTGTTGCTAGGAAAAAAAATAGCTGTATAATGTATTGTCTGTTTGGTAGTAGTACATACCACGACGACATTGAGCTAAGTAAAGTTTGA-TCCGGAACGTGGGCTTAGTTTGTGCTGAAAAAAAAAAAAAA]
[+] EMBL AK108428 [ACGTTCGTTGAGAGGTCCACGGATTGTGTTAATCTTTTGAAAGAGTTGGAACTGCACAAAAGGCCAGAGGGAAATGATATCCCTTTGTTTGATTTGGAGGGTCTCCAATGCTTAGGCTCAATACTACGCATAGTTTCTCAGAGCAGTACTACCATGGATTTCTCAAATATTTCAATCCAGTGGTTCCGTGTACACCCAAAAGAAAGTAACAAAGAGATTATTTCAGGTGCCACAAGATCAGTATATGCTCCCGAACCACATGACGTTGGACGGTATTTGGAAGCTGAAATTAATTATGGTGGTGAAATTGCTATAGCAAAGACAGCTGGGCCAATAGACCCTGACGCTGGATTGGTCGATTATGTAGAGACACTCGTAAGGAAACGTGAAACTGAGTTCAATGTTGTTGTGCTTCAGTTGAATGGAATTGATCAGCCAAAAGAGTCTGTTCATGTTCTCAATATTGGAAAATTGAGGATGAGGCTTTCTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTCGTCATCAATGCAGCTATGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTCTCAGGCGATGTTCTGGCGGCCGAGGAATGACCTCAGCATGGTCCTGGCCTTCGAAACGACGAGAGAACGCAACACCGCAATCATGCTCACCCGGCGATTCGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGCGACAAGACTCCATGGTGAAGAAACGCGAGCGCGCCACCACCGGTGCTCATCATCCTCTGATCCTCCGCAACTTCAAACCCCGTGCTGCGGTTGTATGTACATTTTCTGGTGCACATTGTGTTTTGCATCATGCCCTGTTTGTCAGTTAGTATGCGGTTCTTCCTTTGTGATGGTTCTTCTGAAAGGCGACGCCTGTGGGCACCGTTTTAGCCGCCTCCGGTTGCCGTCTTTCTCCTCCCCCTGTCAC CGTGATGCTGATGTTCTTACGCTGCTGCGGCTGTGATTTGTTGCTAGGAAAAAAAATAGCTGTATAATGTATTGTCTGTTTGGTAGTAGTACATACCACGACGACATTGAGCTAAGTAAAGTTTGA TCCGGAACGTGGGCT ]
[-] EMBL CB642246 [ GCTGGGCCAATAGACCCTGACGCTGGATTGGTCGATTATGTAGAGACACTCGTAAGGAAACGTGAAACTGAGTTCAATGTTGTTGTGCTTCAGTTGAATGGAATTGATCAGCCAAAAGAGTCTGTTCATGTTCTCAATATTGGAAAATTGAGGATGAGGCTTTCTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTCGTCATCAATGCAGCTATGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTCTCAGGCGATGTTCTGGCGGCCGAGGAATGACCTCAGCATGGTCCTGGCCTTCGAAACGACGAGAGAACGCAACACCGCAATCATGCTCACCCGGCGATTGGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGCGACAAGCCTCCATGGTGAAGAAACGCGAGCGCGCCACCACCGGTGCTCATCATCCTCTGATCCTCCGCAACTTCAAACCCCGTGCTGCGGTTGTATGTACATTTTCTGGTGCACATTGTGTTTTGCATCATGCCCTGTTTGTCAGTTAGTATGGGGTTCTTCCTTTGTGATGGTTCTTCTGAAAGGCGACGCCTGTGGGCACCGTTTTAGCCGCCTCCGGTTGCCGTCTTTTTCCTCCCCCTGTCACTCGCGATGCTGATGTTCTTCCGTTGCTGGGGCTGTGATTTGTTGGTAGGAAAAAAAATAGGTGTATAACGTATTGTCTGTTGGGTAGTAGTACATACCCCGAGGGCATTGAGGTAAGTAAAGTTTGAGTGCGGAACGTGGGCATAGTTTGTGCTGAAAAAAAAAAAAAA]
consensusID : consensus_5161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[TTTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTTGTCATCAATGCAGATATGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTTTCAGGGGATGTTTTGGCGGCCGAGGAATGACCTCAGCATGGTCCTGGCCTTCGAAACGAGGAGAGAACGCAACACCGCAATCATGTTCACCCGGTGATTCGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGAGACAAGACTCCATGGTGAAGAAACGCGAGCGCGCCACCACCGGTGGGGGGGACATGGACATGAGTGCCATTATTGTGGACAAAGCGACGGTGGTAGCCGCGTGTGAGACGGTGCATGTCTCCAACAGTGAAGGCGGCTGAGATGGGGCAGCGGGGGAGAGTCATCAAGGAGATTATTGAAGATGCACGGGAGGGT]
[-] EMBL CB642285 [TTTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTTGTCATCAATGCAGATATGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTTTCAGGGGATGTTTTGGCGGCCGAGGAATGACCTCAGCATGGTCCTGGCCTTCGAAACGAGGAGAGAACGCAACACCGCAATCATGTTCACCCGGTGATTCGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGAGACAAGACTCCATGGTGAAGAAACGCGAGCGCGCCACCACCGGTGGGGGGGACATGGACATGAGTGCCATTATTGTGGACAAAGCGACGGTGGTAGCCGCGTGTGAGACGGTGCATGTCTCCAACAGTGAAGGCGGCTGAGATGGGGCAGCGGGGGAGAGTCATCAAGGAGATTATTGAAGATGCACGGGAGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5161#0 ACGTTCGTTGAGAGGTCCACGGATTGTGTTAATCTTTTGAAAGAGTTGGAACTGCACAAA 60
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 AGGCCAGAGGGAAATGATATCCCTTTGTTTGATTTGGAGGGTCTCCAATGCTTAGGCTCA 120
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 ATACTACGCATAGTTTCTCAGAGCAGTACTACCATGGATTTCTCAAATATTTCAATCCAG 180
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 TGGTTCCGTGTACACCCAAAAGAAAGTAACAAAGAGATTATTTCAGGTGCCACAAGATCA 240
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 GTATATGCTCCCGAACCACATGACGTTGGACGGTATTTGGAAGCTGAAATTAATTATGGT 300
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 GGTGAAATTGCTATAGCAAAGACAGCTGGGCCAATAGACCCTGACGCTGGATTGGTCGAT 360
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 TATGTAGAGACACTCGTAAGGAAACGTGAAACTGAGTTCAATGTTGTTGTGCTTCAGTTG 420
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 AATGGAATTGATCAGCCAAAAGAGTCTGTTCATGTTCTCAATATTGGAAAATTGAGGATG 480
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 AGGCTTTCTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTCGTCATCAATGCAGCTA 540
consensus_5161#1 ------TTTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTTGTCATCAATGCAGATA 54
* *********************************** ************* **
consensus_5161#0 TGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTCTCAGGCGATGTTCTGGCGGCCGAGGAAT 600
consensus_5161#1 TGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTTTCAGGGGATGTTTTGGCGGCCGAGGAAT 114
******************************* ***** ****** ***************
consensus_5161#0 GACCTCAGCATGGTCCTGGCCTTCGAAACGACGAGAGAACGCAACACCGCAATCATGCTC 660
consensus_5161#1 GACCTCAGCATGGTCCTGGCCTTCGAAACGAGGAGAGAACGCAACACCGCAATCATGTTC 174
******************************* ************************* **
consensus_5161#0 ACCCGGCGATTCGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGCGACAAGACTCCA 720
consensus_5161#1 ACCCGGTGATTCGCCATAGATTGCAATATCATCCTTGCCGGTCCAGGAGACAAGACTCCA 234
****** **************************************** ************
consensus_5161#0 TGGTGAAGAAACGCGAGCGCGCCACCACCGGTGCTCATCATCCTCTGATCCTCCGCAACT 780
consensus_5161#1 TGGTGAAGAAACGCGAGCGCGCCACCACCGGTGGGGGGGACATGGACATGAGTGCCATTA 294
********************************* * ** **
consensus_5161#0 TCAAACCCCGTGCTGCGGTTGTATGTACATTTTCTGGTGCACATTGTGTTTTGCATCATG 840
consensus_5161#1 TTGTGGACAAAGCGACGGTGGTAGCCGCGTGTGAGACGGTGCAT-GTCTCCAACAGTGAA 353
* * ** **** *** * * * * *** ** * **
consensus_5161#0 CCCTGTTTGTCAGTTAGTATGCGGTTCTTCCTTTGTGATGGTTCTTCTGAAAGGCGACGC 900
consensus_5161#1 GGCGGCTGAGATGGGGCAGCGGGGGAGAGTCATCAAGGAGATTATT---GAAGATG-CAC 409
* * * * * ** * * * * ** ** *** * * *
consensus_5161#0 CTGTGGGCACCGTTTTAGCCGCCTCCGGTTGCCGTCTTTCTCCTCCCCCTGTCACCGTGA 960
consensus_5161#1 GGGAGGGT---------------------------------------------------- 417
* ***
consensus_5161#0 TGCTGATGTTCTTACGCTGCTGCGGCTGTGATTTGTTGCTAGGAAAAAAAATAGCTGTAT 1020
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 AATGTATTGTCTGTTTGGTAGTAGTACATACCACGACGACATTGAGCTAAGTAAAGTTTG 1080
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 ATCCGGAACGTGGGCTTAGTTTGTGCTGAAAAAAAAAAAAAA 1122
consensus_5161#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||