cluster # 5163

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Oryza sativa
cluster # 5163 cluster # 5163 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5163#0 length = 451 sequences # 2

consensus_5163#1 length = 414 sequences # 1

consensusID : consensus_5163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 451
fasta sequence

                              [TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCTACACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT]

[+] EMBL CF301410             [TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCTACACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATA                                   ]
[-] EMBL OSC8001              [                                                                                                                                                                                                                                                                                                  TCAGCTTGACACGAAGGNCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTNAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT]




>consensus_5163#0
TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCA
ACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACA
TGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAATCTC
AACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCTA
CACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGAC
ACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGC
TGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCT
TGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT

consensusID : consensus_5163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [TTTTTTTTTTTTTTTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGGTCTACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG]

[-] EMBL AU089762             [TTTTTTTTTTTTTTTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGGTCTACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG]




>consensus_5163#1
TTTTTTTTTTTTTTTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAAC
ACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCA
GCTAAAACATAAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACT
CCCGACGGTGAGGCGCCAGGTCTACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGC
CACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGT
CTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTC
TCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5163#0      TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCA 60
consensus_5163#1      ------------------------------------TTTTTTTTTTTTTTTGAAACATCA 24
                                                               **   **  **********

consensus_5163#0      ACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACA 120
consensus_5163#1      ACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACA 84
                      ************************************************************

consensus_5163#0      TGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAA-TCT 179
consensus_5163#1      TGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAAATCT 144
                      ******************************************************** ***

consensus_5163#0      CAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCT 239
consensus_5163#1      CAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAG-GTCT 203
                      ******************************************************* ****

consensus_5163#0      ACACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGA 299
consensus_5163#1      ACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGA 263
                      ***** **************** *************************************

consensus_5163#0      CACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACG 359
consensus_5163#1      CACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACG 323
                      ************************************************************

consensus_5163#0      CTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGC 419
consensus_5163#1      CTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGC 383
                      ************************************************************

consensus_5163#0      TTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT 451
consensus_5163#1      TTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG- 414
                      *******************************