These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 451 fasta sequence [TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCTACACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT] [+] EMBL CF301410 [TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCTACACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATA ] [-] EMBL OSC8001 [ TCAGCTTGACACGAAGGNCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTNAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT] consensusID : consensus_5163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [TTTTTTTTTTTTTTTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGGTCTACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG] [-] EMBL AU089762 [TTTTTTTTTTTTTTTGAAACATCAACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACATGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAAATCTCAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGGTCTACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGACACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACGCTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5163#0 TTTTTCGAATCAATTTTGTTCACTTTGATGAAACATCGAAATTCAATTGCTGAAACATCA 60 consensus_5163#1 ------------------------------------TTTTTTTTTTTTTTTGAAACATCA 24 ** ** ********** consensus_5163#0 ACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACA 120 consensus_5163#1 ACATATCTGTATGCATTAAGGACCAAGTTATGAAACACTATCTATAATCCTACTGCAACA 84 ************************************************************ consensus_5163#0 TGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAA-TCT 179 consensus_5163#1 TGTCAAATCCAACGCAAAGAAACAAAAAATAAACCAGCTAAAACATAAAAAAAAAAATCT 144 ******************************************************** *** consensus_5163#0 CAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAGCGTCT 239 consensus_5163#1 CAACACACCCATTCTCGTACTCATCTCCTGCACACTCCCGACGGTGAGGCGCCAG-GTCT 203 ******************************************************* **** consensus_5163#0 ACACAAACCTCCTTGAGTGCAAAATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGA 299 consensus_5163#1 ACACAGACCTCCTTGAGTGCAAGATGAAAAGGGTCGCCACCATCTGGTCCATCAGCTTGA 263 ***** **************** ************************************* consensus_5163#0 CACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACG 359 consensus_5163#1 CACGAAGGTCGCCTCATGCTGCTGCCTCACACAACGTCTTCCTCAATGCTGGCCACCACG 323 ************************************************************ consensus_5163#0 CTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGC 419 consensus_5163#1 CTGCCATTGCATGTTGTCTTAGTGCCGGACCTCACTCTCCTTGGAGCTTGCAGCATATGC 383 ************************************************************ consensus_5163#0 TTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGT 451 consensus_5163#1 TTGGGGAAGAGAGAGAGAGAGAGAGAGAGAG- 414 ******************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||