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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1851 fasta sequence
[TCCCTCCGTCCCAATATAAGTGCATTTAGGACAGGATGTGATATATCCTAGGACTACAAATCTGGACAGTTGTCTGTTCATATTCGTAGTCCTAGGATATGTCACATACTATACTAGGTGTATTTATATTGGGACGGAGGGAGCAGTACTTAAAGTATATTTGCAACTTTTTACTGAACTTGGTGTGCTGTGTCAGGCGACTACTCCAGAGGATTGATTACTTCATGCCTTGACAATGATGTGAAGTAGCATGACCTTGCGATTCATATGGTCGGGGATCGAGGCACATATACACCCAACCCAGTTCATTGAGTGATCAGTAGAGAGATTCTTCCCCTCTTCTCCTGCCAGCTCTTCCAGGTTCTGAGTTCTGACCATGGCGGCTGGAGCGATTCCAATGGCGTACCAGACCACTCCGTCATCGCCAGACTGGCTGAACAAGGGCGACAACGCATGGCAGATGACATCGGCGACCCTCGTCGGCCTGCAGAGCATGCCAGGGCTGGTGATCCTGTACGGCAGCATTGTCTAGAAGAAGTGGGCTATCAACTCGGCGTTCATGGCGCTGTATGCCTTCGCTGCTGTCTGGATCTGCTGGGTTGTCTGGGCATACAACATGTCGTTCGGCGACCGCCTCCTGCCATTCTGGGGTAAGGCACGGCCAGCGCTCGGGCAGAGCTTCCTCGTGGCGCAGTCTGAGCTCACTGCTACCGCTATTCGCTACCACAATGGGTCAGCTGAGGCGCCCATGCTCAAGCCGTTGTACCCAGTCGCCACCATGGTGTACTTCCAGTGCATGTTTGCGAGCATCACCATCATCATCCTCGCAGGCTCACTGCTTGGGCGCATGAACATCAAGGCGTGGATGGCCTTTGTGCCGCTCTGGATCACCTTCTCTTACACGGTCTGCGCCTTCTCGCTCTGGGGTGGCGGTTTCCTCTTCCAGTGGGGTGTCATAGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCTGGCATCGCAGGCCTCACTGCTGCCTACTGGGTTGGACCAAGGTCAGCATCAGATAGGGAGAGATTCCCGCCCAACAACATACTGCTGGTGCTAGCAGGGGCGGGGCTGCTGTGGCTTGGGTGGACAGGTTTCAATGGAGGAGACCCATATTCAGCCAATATTGATTCATCCATGGCAGTGCTCAACACACATATCTGCGCATCCACCAGCCTACTCGTGTGGACAATCCTGGATGTCTTCTTCTTCGGGAAGCCATCGGTAATTGGCGCGGTGCAGGGCATGATCACTGGCCTGGTATGCATCACCCCTGGTGCAGGCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGTACACCATGATGGTGCTGCACAAGAAATGGTCATTCATGCAGAGGATTGATGACACGCTTGGTGTCTTCCACACCCATGCGGTGGCTGGGTTCCTTGGTGGCGCCACCACTGGACTCTTCGCCGAGCCCATCCTATGCAGTCTCTTCCTATCTATCCCAGATTCTAAAGGTGCATTCTACGGTGGCCCCGGTGGATCACAGTTCGGGAAGCAGATTGCTGGCGCACTATTTGTCACTGCCTGGAATATTGTTATCACCTCCATCACCTGTGTCATCATCAGCCTAATCCTGCCCCTCCGTATAGCTGATCAAGAACTGCTTATTGGAGATGATGCTGTACACGGTGAGGAGGCATATGCTATCTGGGCAGAGGGAGAGCTCAATGACATGACCCACCACAATGAGAGCACACATAGTGGTGTCTCTGTAGGAGTGACACAGAATGTTTGAACAGTACCCACTTTATTGAGGAAAAAGAAATA]
[+] EMBL AK108711 [TCCCTCCGTCCCAATATAAGTGCATTTAGGACAGGATGTGATATATCCTAGGACTACAAATCTGGACAGTTGTCTGTTCATATTCGTAGTCCTAGGATATGTCACATACTATACTAGGTGTATTTATATTGGGACGGAGGGAGCAGTACTTAAAGTATATTTGCAACTTTTTACTGAACTTGGTGTGCTGTGTCAGGCGACTACTCCAGAGGATTGATTACTTCATGCCTTGACAATGATGTGAAGTAGCATGACCTTGCGATTCATATGGTCGGGGATCGAGGCACATATACACCCAACCCAGTTCATTGAGTGATCAGTAGAGAGATTCTTCCCCTCTTCTCCTGCCAGCTCTTCCAGGTTCTGAGTTCTGACCATGGCGGCTGGAGCGATTCCAATGGCGTACCAGACCACTCCGTCATCGCCAGACTGGCTGAACAAGGGCGACAACGCATGGCAGATGACATCGGCGACCCTCGTCGGCCTGCAGAGCATGCCAGGGCTGGTGATCCTGTACGGCAGCATTGTCTAGAAGAAGTGGGCTATCAACTCGGCGTTCATGGCGCTGTATGCCTTCGCTGCTGTCTGGATCTGCTGGGTTGTCTGGGCATACAACATGTCGTTCGGCGACCGCCTCCTGCCATTCTGGGGTAAGGCACGGCCAGCGCTCGGGCAGAGCTTCCTCGTGGCGCAGTCTGAGCTCACTGCTACCGCTATTCGCTACCACAATGGGTCAGCTGAGGCGCCCATGCTCAAGCCGTTGTACCCAGTCGCCACCATGGTGTACTTCCAGTGCATGTTTGCGAGCATCACCATCATCATCCTCGCAGGCTCACTGCTTGGGCGCATGAACATCAAGGCGTGGATGGCCTTTGTGCCGCTCTGGATCACCTTCTCTTACACGGTCTGCGCCTTCTCGCTCTGGGGTGGCGGTTTCCTCTTCCAGTGGGGTGTCATAGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCTGGCATCGCAGGCCTCACTGCTGCCTACTGGGTTGGACCAAGGTCAGCATCAGATAGGGAGAGATTCCCGCCCAACAACATACTGCTGGTGCTAGCAGGGGCGGGGCTGCTGTGGCTTGGGTGGACAGGTTTCAATGGAGGAGACCCATATTCAGCCAATATTGATTCATCCATGGCAGTGCTCAACACACATATCTGCGCATCCACCAGCCTACTCGTGTGGACAATCCTGGATGTCTTCTTCTTCGGGAAGCCATCGGTAATTGGCGCGGTGCAGGGCATGATCACTGGCCTGGTATGCATCACCCCTGGTGCAGGCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGTACACCATGATGGTGCTGCACAAGAAATGGTCATTCATGCAGAGGATTGATGACACGCTTGGTGTCTTCCACACCCATGCGGTGGCTGGGTTCCTTGGTGGCGCCACCACTGGACTCTTCGCCGAGCCCATCCTATGCAGTCTCTTCCTATCTATCCCAGATTCTAAAGGTGCATTCTACGGTGGCCCCGGTGGATCACAGTTCGGGAAGCAGATTGCTGGCGCACTATTTGTCACTGCCTGGAATATTGTTATCACCTCCATCACCTGTGTCATCATCAGCCTAATCCTGCCCCTCCGTATAGCTGATCAAGAACTGCTTATTGGAGATGATGCTGTACACGGTGAGGAGGCATATGCTATCTGGGCAGAGGGAGAGCTCAATGACATGACCCACCACAATGAGAGCACACATAGTGGTGTCTCTGTAGGAGTGACACAGAATGTTTGAACAGTACCCACTTTATTGAGGAAAAAGAAATA]
consensusID : consensus_5164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence
[CAAGGGGAAGAATCTCTCTACTGATCACTCAACGAACTGGGTTGGGTGTATATATGCCTCGATCCCCGACTACAAACAATGCTGTGATCTTACTACTTAACTGCAATTCTGTTTTGATAATTAAGCTTACCCATATGAATCGCAAGGTCATGCTACTTCACATCATTGTCAAGGCATGAAGTAATCAATCCTCTGGAGTAGTCGCCTGACACAGCACACCAAGGGTGGCCGAATGCGTGGACTAAACCGCATACTGAAACAATACAAAGAGAAGAAAGCAACATTCAGAAAGGTACTTGGTTGACCTAGAAGAGCTGCATTTCCAGTCTTGAACGGCTCGCGAAAAGGACATCACCTCACGAGGAAGAATAACTGAACAAAAGCAGCTGAGTATCTTTCCCTTCACTCTCTTTCACGACCCCTTCAATGAACTGTAAGAATCATCAAATCAACTCCGAGGTATAGATGGAATTATTCTACGCTTTGATACTTTCACCGT-CCATTCGTCCAAGAAAGTTTAAAGATGTAGCAGTTTGGCATGCATGTTGT-TCCTCTCCTATTGGAGATTCGCACTAC-TTTTCTAATGAGGCGAGACTGTTTGGTACTG-GTTTTTAAGGGACTTTGGTGATACTAAATGCATTTCTGTCAGTGGCCGATCGAGACAGAAGGGGTTGCTGTTGACTTGTTTTGTTTGTGTGCTGTGTAGTACTTATACCAGCTAGAACCCATTTACCACCCATAATAGCACATTGTAATGATCCTTGGGAATGGATGAAAGTATTAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA]
[+] EMBL CA764370 [CAAGGGGAAGAATCTCTCTACTGATCACTCAACGAACTGGGTTGGGTGTATATATGCCTCGATCCCCGACTACAAACAATGCTGTGATCTTACTACTTAACTGCAATTCTGTTTTGATAATTAAGCTTACCCATATGAATCGCAAGGTCATGCTACTTCACATCATTGTCAAGGCATGAAGTAATCAATCCTCTGGAGTAGTCGCCTGACACAGCACACCAAGGGTGGCCGAATGCGTGGACTAAACCGCATACTGAAACAATACAAAGAGAAGAAAGCAACATTCAGAAAGGTACTTGGTTGACCTAGAAGAGCTGCATTTCCAGTCTTGAACGGCTCGCGAAAAGGACATCACCTCACGAGGAAGAATAACTGAACAAAAGCAGCTGAGTATCTTTCCCTTCACTCTCTTTCACGACCCCTTCAATGAACTGTAAGAATCATCAAATCAACTCCGAGGTATAGATGGAATTATTCTACGCTTTGATACTTTCACCGT CCATTCGTCCAAGAAAGTTTAAAGATGTAGCAGTTTGGCATGCATGTTGT TCCTCTCCTATTGGAGATTCGCACTAC TTTTCTAATGAGGCGAGACTGTTTGGTACTG GTTTTTAAGGGACTTTGGTGATACTAAATGCATTT ]
[+] EMBL BQ907917 [ TACTTTCACCGTGCCATTCGTCCAAGAAAGTTTAAAGATGTAGCAGTTTGGCATGCATGTTGTGTCCTCTCCTATTGGAGATTCGCACTACGTTTTCTAATGAGGCGAGACTGTTTGGTACTGTTTTTTTAAGGGACTTTGGTGATACTAAATGCATTTCTGTCAGTGGCCGATCGAGACAGAAGGGGTTGCTGTTGACTTGTTTTGTTTGTGTGCTGTGTAGTACTTATACCAGCTAGAACCCATTTACCACCCATAATAGCACATTGTAATGATCCTTGGGAATGGATGAAAGTATTAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5164#0 TCCCTCCGTCCCAATATAAGTGCATTTAGGACAGGATGTGATATATCCTAGGACTACAAA 60
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 TCTGGACAGTTGTCTGTTCATATTCGTAGTCCTAGGATATGTCACATACTATACTAGGTG 120
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 TATTTATATTGGGACGGAGGGAGCAGTACTTAAAGTATATTTGCAACTTTTTACTGAACT 180
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 TGGTGTGCTGTGTCAGGCGACTACTCCAGAGGATTGATTACTTCATGCCTTGACAATGAT 240
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 GTGAAGTAGCATGACCTTGCGATTCATATGGTCGGGGATCGAGGCACATATACACCCAAC 300
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 CCAGTTCATTGAGTGATCAGTAGAGAGATTCTTCCCCTCTTCTCCTGCCAGCTCTTCCAG 360
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 GTTCTGAGTTCTGACCATGGCGGCTGGAGCGATTCCAATGGCGTACCAGACCACTCCGTC 420
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 ATCGCCAGACTGGCTGAACAAGGGCGACAACGCATGGCAGATGACATCGGCGACCCTCGT 480
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 CGGCCTGCAGAGCATGCCAGGGCTGGTGATCCTGTACGGCAGCATTGTCTAGAAGAAGTG 540
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 GGCTATCAACTCGGCGTTCATGGCGCTGTATGCCTTCGCTGCTGTCTGGATCTGCTGGGT 600
consensus_5164#1 ------------------CAAGGGGAAGAATCTCTCTACTGATCACTCAACGAACTGGGT 42
** ** * * ** ** *** * ** * ******
consensus_5164#0 TGTCTGGGCATACAACATGTCGTTCGGCGACCGCC--TCCTGCCATTCTGGGGTAAGGCA 658
consensus_5164#1 TGGGTGTATATATGCCTCGATCCCCGACTACAAACAATGCTGTGATCTTACTACTTAACT 102
** ** *** * * ** * ** * * *** ** * *
consensus_5164#0 CGGCCAGCGCTCGGGCAG---AGCTTCCTCGTGGCGCAGTCTGAGCTCACTGCTACCGCT 715
consensus_5164#1 GCAATTCTGTTTTGATAATTAAGCTTACCCATA-TGAATCGCAAGGTCA-TGCTACTTCA 160
* * * * ***** * * * * * ** *** ****** *
consensus_5164#0 ATTCGCTACCACAATGGGTCAGCTGAGGCGCCCATGCTCAAGCCGTTGTACCCAGTCGCC 775
consensus_5164#1 CATCATTGTCAAGGCA-------TGAAG------TAATCAATCCTCTGGAGT-AGTCGCC 206
** * ** *** * * **** ** ** * *******
consensus_5164#0 -ACCATGGTGTACTTCCAGTGCATGTTTGCGAGCATCACCATCATCATCCTCGCAGGCTC 834
consensus_5164#1 TGACACAGCACACCAAGGGTGGCCGAATGCGTGGACTA--AACCGCATACT----GAAAC 260
** * ** *** * **** * * * * * *** ** * *
consensus_5164#0 ACTGCTTGGGCGCATGAACATCAAGGCGTGGATGGCCTTTGTGCCGCTCTGGATCACCTT 894
consensus_5164#1 AATACAAAGAGAAGAAAGCAACA--TTCAGAAAGGTACTTG-GTTGACCTAGAAGAGCTG 317
* * * * * ** ** * * ** *** * * ** ** * **
consensus_5164#0 CTCTTACACGGTCTGCGCCTTCTCGCTCTGGGGTGGCGGTTTCCTCTTCCAGTGGGGTGT 954
consensus_5164#1 CATTTCCA--GTCTTGAACGGCTCGC---GAAAAGGACATCACCTCACGAGGAAGAATAA 372
* ** ** **** * ***** * ** * **** * * *
consensus_5164#0 CATAGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCTGGCATCGCAGGCCTCACTGC 1014
consensus_5164#1 CTGAACAAAAGCAGCTGAGTATCTTTCCCTTCACTCTCTT----TCACGACCCCTTCAAT 428
* * * * * ** *** * ** ** **** * ** * ** *
consensus_5164#0 TGCCTACTGGGTTGGACCAAGGTCAGCATCAGATAGGGA-GAGATTCCCGCCCAACAACA 1073
consensus_5164#1 GAACTGTAAGAATC-ATCAAATCAACTCCGAGGTATAGATGGAATTATTCTACGCTTTGA 487
** * * * *** * ** ** ** * *** * *
consensus_5164#0 TACTGCTGGTGCTAGCAGGGGCGGGGCTGCTGTGGCTTGGGTGGACAGGTTTCAATGGAG 1133
consensus_5164#1 TACTTTCACCGTCCATTCGTCCAAGAAAGTTTAAAGATG---TAGCAGTTTGGCATGCAT 544
**** * * * * * * ** *** ** *** *
consensus_5164#0 GAGACCCATATTCAGCCAATATTGATTCATCCATGGCAGTGCTCAACACACATATCTGCG 1193
consensus_5164#1 GTTGTTCCTCTC---CTATTGGAGATTCG--CACTACTTTTCTAATGAGGCGAGACTGTT 599
* * * * * * * ***** ** * * ** * * * ***
consensus_5164#0 CATCCACCAGCCTACTCGTG---TGGACAATCCTGGATGTCTTCTTCTTCGGGAAGCCAT 1250
consensus_5164#1 TGGT-ACTGGTTTTTAAGGGACTTTGGTGATACTAAATGCATTTCTGTC-----AGTGGC 653
** * * * * * * ** ** *** ** * * **
consensus_5164#0 CGGTAATTGGCGCGGTGCAGGGCATGATCACTGGCCTGGTATGCATCACCCCTGGTGCAG 1310
consensus_5164#1 CGAT------CGAGACAGAAGGGGTTGCTGTTGACTTGTTTTGT-TTGTGTGCTGTGTAG 706
** * ** * * ** * ** * ** * ** * *** **
consensus_5164#0 GCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGT 1370
consensus_5164#1 TACTTATACCAGCTAGAACCCATTTACCACCCATAATAGCACATTGTAATGATCCTTGGG 766
** * * ** * * * * * *** * *** *** ***
consensus_5164#0 ACACCATGATGGTGCT--GCACAAGAAATGGTCATTCATGCAGAGGATTGATGACACGCT 1428
consensus_5164#1 AATGGATGAAAGTATTAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA 826
* **** ** * ** ** *** * * * * * * * **
consensus_5164#0 TGGTGTCTTCCACACCCATGCGGTGGCTGGGTTCCTTGGTGGCGCCACCACTGGACTCTT 1488
consensus_5164#1 AAAAAA------------------------------------------------------ 832
consensus_5164#0 CGCCGAGCCCATCCTATGCAGTCTCTTCCTATCTATCCCAGATTCTAAAGGTGCATTCTA 1548
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 CGGTGGCCCCGGTGGATCACAGTTCGGGAAGCAGATTGCTGGCGCACTATTTGTCACTGC 1608
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 CTGGAATATTGTTATCACCTCCATCACCTGTGTCATCATCAGCCTAATCCTGCCCCTCCG 1668
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 TATAGCTGATCAAGAACTGCTTATTGGAGATGATGCTGTACACGGTGAGGAGGCATATGC 1728
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 TATCTGGGCAGAGGGAGAGCTCAATGACATGACCCACCACAATGAGAGCACACATAGTGG 1788
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 TGTCTCTGTAGGAGTGACACAGAATGTTTGAACAGTACCCACTTTATTGAGGAAAAAGAA 1848
consensus_5164#1 ------------------------------------------------------------
consensus_5164#0 ATA 1851
consensus_5164#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||