These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence [GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGCACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTATTTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGCTCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCTCTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGCTGTCACTTCGTTCTTTTCTTTCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAACCTAATACTTATCTTACTTCGTGTACGTGGTTGTTGCTTTTTATCTTATCGATAATACCTCTTGCTGTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTCATCTTCATATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGCATCTTTTTTTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCCATAATCATTTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTTTTCCATTTCTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTATGTTTGTACGTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTACAGCCATAGATCCGTTT] [+] EMBL BE040013 [GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGCACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTATTTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGCTCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCTCTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGCTGTCACTTCGTTCTTTTCTTTCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAACCTAATACTTATCTTACTTCGTGTACGTGGTTGTTGCTTTTTATCTTATCGATAATACCTCTTGCTGTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTCATCTTCATATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGCATCTTTTTTTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCCATAATCATTTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTTTTCCATTTCTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTATGTTTGTACGTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTACAGCCATAGATCCGTTT] consensusID : consensus_5168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 540 fasta sequence [NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGCCCTNTGTCCCCCGTGTTATCATGTGGTAGCATCTTGNNAGCATACACATGATCCATATCGTATTGCTCTATAGGTGTANAGCATACATATGCCATGTTGAAAAGGATGGAGCTTAGTNATANACAGGATCCCCCATTGCACCCCTGTGCTTTCTGGATGAGGAGGCCGGTGCANAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTACTCTTTTAGTTACTCTGTGTTTGATATGGTAGATGTACATATATGTATATCACAGATGGTGGGGGGAATGGTAGTAGGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGCTCCTGATGGCCTTCAATGTCAGTCAGTAATTTCCTTCAAAAAAA] [+] EMBL BI806914 [NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGCCCTNTGTCCCCCGTGTTATCATGTGGTAGCATCTTGNNAGCATACACATGATCCATATCGTATTGCTCTATAGGTGTANAGCATACATATGCCATGTTGAAAAGGATGGAGCTTAGTNATANACAGGATCCCCCATTGCACCCCTGTGCTTTCTGGATGAGGAGGCCGGTGCANAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTACTCTTTTAGTTACTCTGTGTTTGATATGGTAGATGTACATATATGTATATCACAGATGGTGGGGGGAATGGTAGTAGGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGCTCCTGATGGCCTTCAATGTCAGTCAGTAATTTCCTTCAAAAAAA] [-] EMBL CF337716 [ tTATAGCATACATA GCCA G TGAAAAGGA GGAGCTTAGTAATA ACAGGATCCCCCATTGCACCCCTGTGC TTCTGGATGAGGAGGCCGGTGCA AATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTACTCTTTTAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5168#0 GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGC 60 consensus_5168#1 ------------------------------------------------------------ consensus_5168#0 ACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTAT 120 consensus_5168#1 ------------------------------------------------------------ consensus_5168#0 TTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGC 180 consensus_5168#1 ---------------------------NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGC 33 * ** * * * * ** * ** *** consensus_5168#0 TCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCT 240 consensus_5168#1 CCTNTGTCC-CCCGTG--TTATCATGTGGTAGCATCTTGNNAGCATACACATGATCCA-T 89 ** *** * *** **** * * ** * * *** * ** * consensus_5168#0 CTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGC-TGTCAC 299 consensus_5168#1 ATCGTATTGCTCTATAGGTGTANAGCATAC----ATATGCCATGTTGAAAAGGATGGAGC 145 * * ** *** **** * * * ** * ** * ** * consensus_5168#0 TTCGTTCTTTTCTT--TCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAAC 357 consensus_5168#1 TTAGTNATANACAGGATCCCCCATTGCACCC-CTGTGCTTTCTGGATG-AGGAGGCCGGT 203 ** ** * * ** * **** **** ** * ******* * * * ** consensus_5168#0 CTAATACTTATCTTACTTCGTGTACGTGGTTGTTGC--TTTTTATCTTATCGATAATACC 415 consensus_5168#1 GCANAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGT 263 * * * * * *** * * *** * ** * * ** * ** consensus_5168#0 TCTTGCT---GTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTC 472 consensus_5168#1 TTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCC--TGTCAT 321 * * * ** *** ***** ** * * * ** * * **** consensus_5168#0 ATCTTCATATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGC 532 consensus_5168#1 AACTAC-TAAGTTTTG--CTGAAACCTTATAGGTCTTTATTACTCTTTTAGTTACTCTGT 378 * ** * ** ** ** * * * * ***** * * ** * * ** consensus_5168#0 ATCTTTTTTTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCC 592 consensus_5168#1 GTTTGATATGGTAGATGTACATATAT--GTATATCACAGATGGTGGGGGGAATGGTAGTA 436 * * * * ** * * * * * *** * * * consensus_5168#0 ATAATCATTTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTT 652 consensus_5168#1 GGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGC 496 * * *** ** ** ** ** * * * * ** * ** * consensus_5168#0 TTCC-ATTTCTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTA 711 consensus_5168#1 TCCTGATGGCCTTCAATGTCA--GTCAGTAATTTCCTTCAAAAAAA-------------- 540 * * ** * * ** * *** *** * * * ** * consensus_5168#0 TGTTTGTACGTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTA 771 consensus_5168#1 ------------------------------------------------------------ consensus_5168#0 CAGCCATAGATCCGTTT 788 consensus_5168#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||