cluster # 5172

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Oryza sativa
cluster # 5172 cluster # 5172 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5172#0 length = 162 sequences # 2

consensus_5172#1 length = 139 sequences # 1

consensusID : consensus_5172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 162
fasta sequence

                              [TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTCTGGAACATATTTTTGGTACTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC]

[+] EMBL AA751306             [TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTCTGGAACATATTTTTGGTACTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC]
[+] EMBL AA750933             [     TAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTCTGGAACATGTTTTTGGTCCTTATGGTTTGCAATAATT                                                                 ]




>consensus_5172#0
TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTC
TGGAACATATTTTTGGTACTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTT
GCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC

consensusID : consensus_5172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [AATAAAAGATGTTTCCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGAAGTTTATTATTAATGAGTGCAATTCAAAATGAAATAGTTCATTTGCATTCTTCTA]

[+] EMBL AA751187             [AATAAAAGATGTTTCCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGAAGTTTATTATTAATGAGTGCAATTCAAAATGAAATAGTTCATTTGCATTCTTCTA]




>consensus_5172#1
AATAAAAGATGTTTCCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTT
TATGTAAGATCAAAGAATCCTTGAAGTTTATTATTAATGAGTGCAATTCAAAATGAAATA
GTTCATTTGCATTCTTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5172#0      TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTC 60
consensus_5172#1      ----------------------------------------------AATAAAAGATGTTT 14
                                                                    ************* 

consensus_5172#0      T-------GGAACATATTTTTGGTAC-TTATGGTTTGCAATAATTTTATGTAAGATCAAA 112
consensus_5172#1      CCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTTTATGTAAGATCAAA 74
                                ***  *********** *********************************

consensus_5172#0      GAATCCTTGCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC---------- 162
consensus_5172#1      GAATCCTTG-AAGTTTATTATTAATGAGTGCAATTCAAAATG-AAATAGTTCATTTGCAT 132
                      ********* ******************************** ******           

consensus_5172#0      -------
consensus_5172#1      TCTTCTA 139