These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5177#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1624 fasta sequence [GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGATCGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGCCGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCGCGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGACCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCGCGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGGCGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGCGGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGTCGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAAGGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCTGTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGATGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGCTGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACTGGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAATGGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGCACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTGGCCATATCTTTCATTTGGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGGGAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAATCATATTACATTCGTTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTGGCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAATGATGGTGCATTATGGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGATTATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTT] [+] EMBL AK073049 [GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGATCGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGCCGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCGCGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGACCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCGCGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGGCGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGCGGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGTCGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAAGGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCTGTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGATGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGCTGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACTGGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAATGGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGCACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTGGCCATATCTTTCATTTGGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGGGAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAATCATATTACATTCGTTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTGGCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAATGATGGTGCATTATGGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGATTATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTT] [+] EMBL AK102630 [GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGATCGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGCCGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCGCGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGACCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCGCGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGGCGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGCGGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGTCGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAAGGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCTGTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGATGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGCTGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACTGGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAATGGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGCACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTAGCCATATCTTTCATTTGGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGGGAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAATCATATTACATTCGTTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTGGCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAATGATGGTGCATTATGGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGATTATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTT] consensusID : consensus_5177#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [AATCGTGAAACCTGAGACCGCGGTAATGGCACCGTGGCGTTGCGCAGGATTTGTGGAGAATGGATTACTCTTCTTCGAAGAGTTTGGGTACGGATATAGGGTCGGTCCAAGTTATGGTCCATTATAGGGTGTGTGGTAGATCCTTTAGACCGTGCTGGTCGTTTTCGGGAGGCAATTCAGATCATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGATGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGCCTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCCCTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTGATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGCAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGATTAAAAATCATTAAATAATGTATTTTCCAGAAATTAAATAAAAGTTAAATCAATTTAAAAAAAAAAAAAA] [-] EMBL CA759981 [AATCGTGAAACCTGAGACCGCGGTAATGGCACCGTGGCGTTGCGCAGGATTTGTGGAGAATGGATTACTCTTCTTCGAAGAGTTTGGGTACGGATATAGGGTCGGTCCAAGTTATGGTCCATTATAGGGTGTGTGGTAGATCCTTTAGACCGTGCTGGTCGTTTTCGGGAGGCAATTCAGATCATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGATGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGCCTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCCCTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTGATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGCAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGATTAAAAATCATTAAATAATGTATTTTCCAGAAATTAAATAAAAGTTAAATCAATTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5177#0 GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGAT 60 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGC 120 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCG 180 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGA 240 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCG 300 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGG 360 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGC 420 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGT 480 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 CGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAA 540 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCT 600 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGA 660 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 TGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGC 720 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 TGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACT 780 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAAT 840 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGC 900 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 ACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTGGCCATATCTTTCATTT 960 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGG 1020 consensus_5177#1 ------------------------------------------------------------ consensus_5177#0 GAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAA 1080 consensus_5177#1 ----------------------------------------------------------AA 2 ** consensus_5177#0 TCATATTACATTCG-TTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTG 1139 consensus_5177#1 TCGTGAAACCTGAGACCGCGGTAATGGCACCGTGGCGTTGCGCAGGATTTGTGGAGAATG 62 ** * ** * * ** ****** ** * ** * ********** ******* ** consensus_5177#0 GCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAA-TGATGGTGCAT 1198 consensus_5177#1 GATTACTCTTCTTCGAAGAGTTTGGGTACGGATATAGGGTCGGTCCAAGTTATGGTCCAT 122 * *** *************** * ***** **** ***** * ***** *** consensus_5177#0 TAT-GGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGAT 1257 consensus_5177#1 TATAGGGTGTGTGGTAGATCCTTTAGACCGTGCTGGTCGTTTTCGGGAGGCAATTCAGAT 182 *** **************** ***** ***************** *************** consensus_5177#0 TATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTG 1317 consensus_5177#1 CATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGATGCACTTCTTGGGGCTTG 242 **************************************** ****************** consensus_5177#0 CAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGG 1377 consensus_5177#1 CAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGG 302 ************************************************************ consensus_5177#0 TGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTG 1437 consensus_5177#1 TGGTCAGCAACCTGGACGGTATGTGCCTGTTAGGAACATGTATTTAGAAGAAGGGAACTG 362 ************************* ********************************** consensus_5177#0 GTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGG 1497 consensus_5177#1 GTATGCTGCCCCTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGG 422 ********** ************************************************* consensus_5177#0 TATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTAT 1557 consensus_5177#1 TATGAGCAGTGTTGTGCTTGATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTAT 482 ******************* **************************************** consensus_5177#0 TCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAA 1617 consensus_5177#1 TCATCGGATTAGATGTTTGCAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAA 542 ******************* **************************************** consensus_5177#0 TTAATTT----------------------------------------------------- 1624 consensus_5177#1 TTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGATTAAAAATC 602 ******* consensus_5177#0 ------------------------------------------------------------ consensus_5177#1 ATTAAATAATGTATTTTCCAGAAATTAAATAAAAGTTAAATCAATTTAAAAAAAAAAAAA 662 consensus_5177#0 - consensus_5177#1 A 663 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||