These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN] [+] EMBL AU030670 [AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN] consensusID : consensus_5190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC] [+] EMBL AK062786 [GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC] consensusID : consensus_5190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAAAAAAA] [+] EMBL CA756779 [GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5190#0 AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTC 60 consensus_5190#1 -----GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTC 55 consensus_5190#2 ------------------------------------------------------------ consensus_5190#0 AAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG 120 consensus_5190#1 AAGGAAGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG 115 consensus_5190#2 ------------------------GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG 36 *********************************** consensus_5190#0 CTGGACGACAAC-CCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGG 179 consensus_5190#1 CTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGG 175 consensus_5190#2 CTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGG 96 ************ *********************************************** consensus_5190#0 AGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAG 239 consensus_5190#1 AGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAG 235 consensus_5190#2 AGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAG 156 ************************************************************ consensus_5190#0 TGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATAC 299 consensus_5190#1 TGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATAC 295 consensus_5190#2 TGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATAC 216 ********************************* ************************** consensus_5190#0 TTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAG 359 consensus_5190#1 TTAAGGCTTCGTCTTGCTGGCGTGAGTGCCC-AAGTTTTAGTTGTGAAGTGATACTTAAG 354 consensus_5190#2 TTAAGGCTTCGTCTTGCTGGCGTGAGTGCCC----------------------------- 247 ******************************* consensus_5190#0 GCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTT 419 consensus_5190#1 GCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTT 414 consensus_5190#2 --------------------------AAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTT 281 ********************************** consensus_5190#0 GTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTT 479 consensus_5190#1 GTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTT 474 consensus_5190#2 GTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTT 341 ************************************************************ consensus_5190#0 TTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG 539 consensus_5190#1 TTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG 534 consensus_5190#2 TTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG 401 ************************************************************ consensus_5190#0 CCCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 599 consensus_5190#1 CCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC----------------- 577 consensus_5190#2 CCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAA 461 ********************* ****** **** * consensus_5190#0 AAAN- 603 consensus_5190#1 ----- consensus_5190#2 AAAAA 466 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||