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Oryza sativa
cluster # 5191 cluster # 5191       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5191#0 length = 1019 sequences # 2  
consensus_5191#1 length = 304 sequences # 1  

consensusID : consensus_5191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1019
fasta sequence
                              [ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCTGCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTACCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCACACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGACTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTGATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATTCCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATTCGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGGGAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCA-CCGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA]

[+] EMBL AK109759             [ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCTGCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTACCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCACACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGACTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTGATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATTCCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATTCGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGGGAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCA CCGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAAC               ]
[+] EMBL BI803363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACAGAGCT GGGCTGAGGTGGGGAGAAGAGGACCCACCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAA CAGTAGGAGGCACCCGATGAAGGTGATGAGGACTTGAGATGAGCCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA]


>consensus_5191#0 ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCT GCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTA CCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCA CACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGA CTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTG ATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATT CCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATT CGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGG GAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCT GCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCAC CGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTA GGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCT ACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCT GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA GCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTG AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTA TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA



consensusID : consensus_5191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence
                              [AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA]

[-] EMBL BU673301             [AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA]


>consensus_5191#1 AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTAC CAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAA ATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTG AGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATG TGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5191#0      ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCT 60
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      GCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTA 120
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      CCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCA 180
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      CACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGA 240
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      CTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTG 300
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      ATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATT 360
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      CCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATT 420
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      CGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGG 480
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      GAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCT 540
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      GCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCAC 600
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      CGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTA 660
consensus_5191#1      ------------------------------------------------------------
                                                                                  

consensus_5191#0      GGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCT 720
consensus_5191#1      --------------------------------AGCGCCCGCTCGAACC------CTTCCT 22
                                                      **     **** ** *      ******

consensus_5191#0      ACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCT 780
consensus_5191#1      ACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCG 82
                      ******* * **************************** ******************** 

consensus_5191#0      GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA 840
consensus_5191#1      GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA 142
                      ************************************************************

consensus_5191#0      GCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTG 900
consensus_5191#1      GCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTG 202
                      ** ********* * ************** ************************** ***

consensus_5191#0      AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTA 960
consensus_5191#1      AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTA 262
                      ******************************** ***************************

consensus_5191#0      TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA 1019
consensus_5191#1      TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA----------------- 304
                      ******************************************                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)