These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1019 fasta sequence [ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCTGCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTACCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCACACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGACTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTGATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATTCCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATTCGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGGGAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCA-CCGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA] [+] EMBL AK109759 [ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCTGCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTACCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCACACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGACTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTGATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATTCCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATTCGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGGGAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCA CCGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAAC ] [+] EMBL BI803363 [ ACAGAGCT GGGCTGAGGTGGGGAGAAGAGGACCCACCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAA CAGTAGGAGGCACCCGATGAAGGTGATGAGGACTTGAGATGAGCCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA] consensusID : consensus_5191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA] [-] EMBL BU673301 [AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5191#0 ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCT 60 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 GCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTA 120 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 CCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCA 180 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 CACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGA 240 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 CTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTG 300 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 ATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATT 360 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 CCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATT 420 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 CGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGG 480 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 GAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCT 540 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 GCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCAC 600 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 CGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTA 660 consensus_5191#1 ------------------------------------------------------------ consensus_5191#0 GGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCT 720 consensus_5191#1 --------------------------------AGCGCCCGCTCGAACC------CTTCCT 22 ** **** ** * ****** consensus_5191#0 ACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCT 780 consensus_5191#1 ACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCG 82 ******* * **************************** ******************** consensus_5191#0 GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA 840 consensus_5191#1 GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA 142 ************************************************************ consensus_5191#0 GCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTG 900 consensus_5191#1 GCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTG 202 ** ********* * ************** ************************** *** consensus_5191#0 AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTA 960 consensus_5191#1 AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTA 262 ******************************** *************************** consensus_5191#0 TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA 1019 consensus_5191#1 TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA----------------- 304 ****************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||