cluster # 5194

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Oryza sativa
cluster # 5194 cluster # 5194 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5194#0 length = 610 sequences # 1

consensus_5194#1 length = 603 sequences # 2

consensusID : consensus_5194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CTTTTGCTGCTTGTTTCTGATGCGATCTGTTCATCTATTTCCCGTTCAATCACCATCCTTCTTGCGTGATTTAGTTCGCCTTATCTTCTATCTCACCATTATCTACCAGTTTTCGTACATGAATAAATTGGGGCTTTTTTATATTTAACTTTGAGCTGAACAAAACATTTTTTTTTGACATACTATCTATCTAAAGCCCCTAATCTTCTGCATATGATAGTCGCTATCCTGGCTGTTATCGTTAGTTTTATGATTAAACCGGTGCTTCAATTTAATGTTAGATCAGTACCTACACAGTGTTCCTTGCAGTGGTTTATTAATCATTAGTAGTAGTTGATTTGCGCCTGATATTACACCACCCGTCTGATTTTTCTCTCTATCATGCATCCAACTTTAGGATAAGGTTGGCGGAACTACTGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAAGTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTCTGATTGTCACTCT]

[+] EMBL CF306330             [CTTTTGCTGCTTGTTTCTGATGCGATCTGTTCATCTATTTCCCGTTCAATCACCATCCTTCTTGCGTGATTTAGTTCGCCTTATCTTCTATCTCACCATTATCTACCAGTTTTCGTACATGAATAAATTGGGGCTTTTTTATATTTAACTTTGAGCTGAACAAAACATTTTTTTTTGACATACTATCTATCTAAAGCCCCTAATCTTCTGCATATGATAGTCGCTATCCTGGCTGTTATCGTTAGTTTTATGATTAAACCGGTGCTTCAATTTAATGTTAGATCAGTACCTACACAGTGTTCCTTGCAGTGGTTTATTAATCATTAGTAGTAGTTGATTTGCGCCTGATATTACACCACCCGTCTGATTTTTCTCTCTATCATGCATCCAACTTTAGGATAAGGTTGGCGGAACTACTGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAAGTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTCTGATTGTCACTCT]




>consensus_5194#0
CTTTTGCTGCTTGTTTCTGATGCGATCTGTTCATCTATTTCCCGTTCAATCACCATCCTT
CTTGCGTGATTTAGTTCGCCTTATCTTCTATCTCACCATTATCTACCAGTTTTCGTACAT
GAATAAATTGGGGCTTTTTTATATTTAACTTTGAGCTGAACAAAACATTTTTTTTTGACA
TACTATCTATCTAAAGCCCCTAATCTTCTGCATATGATAGTCGCTATCCTGGCTGTTATC
GTTAGTTTTATGATTAAACCGGTGCTTCAATTTAATGTTAGATCAGTACCTACACAGTGT
TCCTTGCAGTGGTTTATTAATCATTAGTAGTAGTTGATTTGCGCCTGATATTACACCACC
CGTCTGATTTTTCTCTCTATCATGCATCCAACTTTAGGATAAGGTTGGCGGAACTACTGC
ACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAAGTT
CTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGT
TTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTCTGA
TTGTCACTCT

consensusID : consensus_5194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [GTGAGTCTGTGAAGAGGAACCGACCAAGCAAACCCTAGCCGCCGCCGCCGCCGCCTCCGCGTCCGCCTCCAGATCCGGCCGTCGGCATGGCGATGCGCGCTCTGGTCTCCAAGCTGAGGGTCCCCGCGGCTGCTTCCCGCCGGGCTCTTCCGCCGTTTCGATCCTTCTCCGCCGCCTCTCAGGATAAGGTTGGCGGAACTACTGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAAGTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATACCACCTAAGTACTGAACACTCAATTGCATGTATGAGTACGTACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATGCCACCAAAGTACTGCACACGTACTCTCAATGGCATGTATGAGTAATGTTTGCATGTATGAGTACGAATGTTATCCATGTGGCCTTGAGCAGAAACATCTTGGAAAGTCG]

[+] EMBL AK101150             [GTGAGTCTGTGAAGAGGAACCGACCAAGCAAACCCTAGCCGCCGCCGCCGCCGCCTCCGCGTCCGCCTCCAGATCCGGCCGTCGGCATGGCGATGCGCGCTCTGGTCTCCAAGCTGAGGGTCCCCGCGGCTGCTTCCCGCCGGGCTCTTCCGCCGTTTCGATCCTTCTCCGCCGCCTCTCAGGATAAGGTTGGCGGAACTACTGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAAGTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATACCACCTAAGTACTGAACACTCAATTGCATGTATGAGTACGTACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATGCCACC                                                                                                        ]
[+] EMBL AK063631             [ TGAGTCTGTGAAGAGGAACCGACCAAGCAAACCCTAGCCGCCGCCGCCGCCGCCTCCGCGTCCGCCTCCAGATCCGGCCGTCGGCATGGCGATGCGCGCTCTGGTCTCCAAGCTGAGGGTCCCCGCGGCTGCTTCCCGCCGGGCTCTTCCGCCGTTTCGATCCTTCTCCGCCGCCTCTCAGGATAAGGTTGGCGGAACTACTGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAAGTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATACCACCTAAGTACTGAACACTCAATTGCATGTATGAGTACGTACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATGCCACCAAAGTACTGCACACGTACTCTCAATGGCATGTATGAGTAATGTTTGCATGTATGAGTACGAATGTTATCCATGTGGCCTTGAGCAGAAACATCTTGGAAAGTCG]




>consensus_5194#1
GTGAGTCTGTGAAGAGGAACCGACCAAGCAAACCCTAGCCGCCGCCGCCGCCGCCTCCGC
GTCCGCCTCCAGATCCGGCCGTCGGCATGGCGATGCGCGCTCTGGTCTCCAAGCTGAGGG
TCCCCGCGGCTGCTTCCCGCCGGGCTCTTCCGCCGTTTCGATCCTTCTCCGCCGCCTCTC
AGGATAAGGTTGGCGGAACTACTGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTG
ATAATAGCAGGAAGGTCGAGAAGTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCA
ACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTA
AGGAGGAGCAAACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATACCACCTAA
GTACTGAACACTCAATTGCATGTATGAGTACGTACTTAGTACTCTGATTGTCACTCTATT
TATGTATCCATATGCCACCAAAGTACTGCACACGTACTCTCAATGGCATGTATGAGTAAT
GTTTGCATGTATGAGTACGAATGTTATCCATGTGGCCTTGAGCAGAAACATCTTGGAAAG
TCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5194#0      CTTTTGCTGCTTGTTTCTGATGCGATCTGTTCATCTATTTCCCGTTCAATCACCATCCTT 60
consensus_5194#1      ------------------------------------------------------------
                                                                                  

consensus_5194#0      CTTGCGTGATTTAGTTCGCCTTATCTTCTATCTCACCATTATCTACCAGTTTTCGTACAT 120
consensus_5194#1      ------------------------------------------------------------
                                                                                  

consensus_5194#0      GAATAAATTGGGGCTTTTTTATATTTAACTTTGAGCTGAACAAAACATTTTTTTTTGACA 180
consensus_5194#1      ------------------------------------------------------------
                                                                                  

consensus_5194#0      TACTATCTATCTAAAGCCCCTAATCTTCTGCATATGATAGTCGCTATCCTGGCTGTTATC 240
consensus_5194#1      -------------------GTGAGTCTGTGAAGAGGA-ACCGACCAAGCAAACCCTAGCC 40
                                          * *   * ** * * ** *    * *  *   *  *   *

consensus_5194#0      GTTAGTTTTATGATTAAACCGGTGCTTCAATTTAATGTTAGATCAGTACCTACACAGTGT 300
consensus_5194#1      GCCG---CCGCCGCCGCCTCCGCG-TCCGCCTCCAGATCCGGCCG---TCGGCATGGCGA 93
                      *                  * * * * *   *  *  *  *  *     *  **  * * 

consensus_5194#0      TCCTTGCAGTGGTTTATTAATCATTAGTA---GTAGTTGATTTGCGCCTGATATTACACC 357
consensus_5194#1      TGCGCGCTCTGGTCTCCAAGCTGAGGGTCCCCGCGGCTGCTTCCCGCCGGGC--TCTTCC 151
                      * *  **  **** *   *       **    *  * ** **  **** *    *   **

consensus_5194#0      ACCCGTCTGATTTTTCTCTCTATCATGCATCCAACTTTAGGATAAGGTTGGCGGAACTAC 417
consensus_5194#1      GCCGTTTCGATCCTTCTC---------CGCCGCCTCTCAGGATAAGGTTGGCGGAACTAC 202
                       **  *  ***  *****         *  *     * **********************

consensus_5194#0      TGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAA 477
consensus_5194#1      TGCACGCGCTGCCGCTAAAGAAGGGACTCCAATTTCTGATAATAGCAGGAAGGTCGAGAA 262
                      ************************************************************

consensus_5194#0      GTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTC 537
consensus_5194#1      GTTCTACAGGAAGCTGCGATGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTC 322
                      ************************************************************

consensus_5194#0      AGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTC 597
consensus_5194#1      AGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAAGGAGGAGCAAACTTAGTACTC 382
                      ************************************************************

consensus_5194#0      TGATTGTCACTCT----------------------------------------------- 610
consensus_5194#1      TGATTGTCACTCTATTTATGTATCCATATACCACCTAAGTACTGAACACTCAATTGCATG 442
                      *************                                               

consensus_5194#0      ------------------------------------------------------------
consensus_5194#1      TATGAGTACGTACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATGCCACCAAA 502
                                                                                  

consensus_5194#0      ------------------------------------------------------------
consensus_5194#1      GTACTGCACACGTACTCTCAATGGCATGTATGAGTAATGTTTGCATGTATGAGTACGAAT 562
                                                                                  

consensus_5194#0      -----------------------------------------
consensus_5194#1      GTTATCCATGTGGCCTTGAGCAGAAACATCTTGGAAAGTCG 603