These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 766 fasta sequence [TTTTTTTTTTATCTTTCATTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATGGNATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCGTCGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTGAGGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACGGTGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCGTAGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGTGCAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGCTCTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAAACGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA] [-] EMBL BQ907377 [TTTTTTTTTTATCTTTCATTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATGGNATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACC ] [+] EMBL CB677104 [ ATCCAACTTGTAGTTATATT GCACTTCCATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCGTCGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTGAGGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACGGTGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCGTAGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGTGCAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGCTCTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAAACGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA] consensusID : consensus_5195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [TTTCACTTTTTCATCCATAAAATCTTGCATTAAGATTCGTGTTATTGTATATCCAACTTGTAGTTATATTGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCACACGTACGGCAGCAGCGCACGCACGCTCAGCTCAGTTCCGGC] [-] EMBL AK063905 [TTTCACTTTTTCATCCATAAAATCTTGCATTAAGATTCGTGTTATTGTATATCCAACTTGTAGTTATATTGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCACACGTACGGCAGCAGCGCACGCACGCTCAGCTCAGTTCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5195#0 TTTTTTTTTTATCTTTCA-TTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATG 59 consensus_5195#1 -------------TTTCACTTTTTCATCCATAAAATCTTG-CATTAAGATTCGTGTTATT 46 ***** ********************* ************ ***** consensus_5195#0 GNATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCT 119 consensus_5195#1 GTATATCCAACTTGTAGTTATATTG-CACTTATATTCAATTACAGGGACCACACTTAGCT 105 * ********** ************ ********************************** consensus_5195#0 AAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACC 179 consensus_5195#1 AAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACC 165 ************************************************************ consensus_5195#0 AGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCT 239 consensus_5195#1 AGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCT 225 ************************************************************ consensus_5195#0 GCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAG 299 consensus_5195#1 GCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAG 285 ************************************************************ consensus_5195#0 CTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCG 359 consensus_5195#1 CTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCA-CACGT 344 ************************************* * * ** ** * consensus_5195#0 TCGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTG 419 consensus_5195#1 ACGGCAGCAGCGCACGCACGCTCAGCTCAGTTCCGGC----------------------- 381 ** * *** * ** * * ***** * consensus_5195#0 AGGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACG 479 consensus_5195#1 ------------------------------------------------------------ consensus_5195#0 GTGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCG 539 consensus_5195#1 ------------------------------------------------------------ consensus_5195#0 TAGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGT 599 consensus_5195#1 ------------------------------------------------------------ consensus_5195#0 GCAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGC 659 consensus_5195#1 ------------------------------------------------------------ consensus_5195#0 TCTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAA 719 consensus_5195#1 ------------------------------------------------------------ consensus_5195#0 ACGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA 766 consensus_5195#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||