These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCCGCCCGGCGCCGAGCTCGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACACCCTGCCAGAGCGGACTCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGACTCCAAGCGTAGGATCTCCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGCCAGGACCTGTTGATCGACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACGGATGCATCGTAGTAGATGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGACCCAACCCTGTGTAGAACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCGGTGCTTGCGCAGAGATAAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGGAAGATTTGCGAGGGGGGGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGCGGGATCACCCTTCTTAAGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTTCATGTTTGAGAATGAAGGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGATGGAGGTATAATTTCACTAGTAAAGA] [+] EMBL CA758498 [GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCCGCCCGGCGCCGAGCTCGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACACCCTGCCAGAGCGGACTCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGACTCCAAGCGTAGGATCTCCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGCCAGGACCTGTTGATCGACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACGGATGCATCGTAGTAGATGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGACCCAACCCTGTGTAGAACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCGGTGCTTGCGCAGAGATAAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGGAAGATTTGCGAGGGGGGGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGCGGGATCACCCTTCTTAAGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTTCATGTTTGAGAATGAAGGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGATGGAGGTATAATTTCACTAGTAAAGA] consensusID : consensus_5200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCTCGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCCTCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCTCCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACATCTAGCCGGTCGGCTACATCCCGGAGGCTGAAGTTGAAGTGGCTGTGTGCGCCAGTTGTGTTCGATTTGCCGATTTCCTTTCTAGATCGTGTTTGATTTGCTTCTTTTTTTTTTTGTCTAAGTAGTGCTCGATTTGCTGGTGAGTGGTGACATCAATTTGCAGTGTGTTGTGTATGGCCTAATTGCTTAATTCATTT] [+] EMBL AK062945 [GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCTCGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCCTCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCTCCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACATCTAGCCGGTCGGCTACATCCCGGAGGCTGAAGTTGAAGTGGCTGTGTGCGCCAGTTGTGTTCGATTTGCCGATTTCCTTTCTAGATCGTGTTTGATTTGCTTCTTTTTTTTTTTGTCTAAGTAGTGCTCGATTTGCTGGTGAGTGGTGACATCAATTTGCAGTGTGTTGTGTATGGCCTAATTGCTTAATTCATTT] consensusID : consensus_5200#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [CGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCGGTCGGCTACAGTCCCGGAGGTCTGAAGGTTGAAGGTGGCTGTGGTGCGCCCAGGTTGGTGGTTTCGACTTTGGCCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTTTGCCTTCTTTTTTTTTTTGTCTAAGGTAGTGTCTCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTGTGTTGAGCGG] [+] EMBL AU225311 [CGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCGGTCGGCTACAGTCCCGGAGGTCTGAAGGTTGAAGGTGGCTGTGGTGCGCCCAGGTTGGTGGTTTCGACTTTGGCCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTTTGCCTTCTTTTTTTTTTTGTCTAAGGTAGTGTCTCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTGTGTTGAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5200#1 GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCT 60 consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 ------------------------------------------------------------ consensus_5200#1 CGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCC 120 consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 ------------------------------------------------------------ consensus_5200#1 TCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCT 180 consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 ------------------------------------------------------------ consensus_5200#1 CCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGC 240 consensus_5200#2 --------------------------------------------CGGCGCCGCCTCCTGC 16 consensus_5200#0 ---------------GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCC 45 ** ** * *** * consensus_5200#1 ACC--GCGCCGGGCGCCGCCTCCTCCCTCCACA-TCTAGCCG-GTCGGCTACA-TCCCGG 295 consensus_5200#2 ACC--GCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCG-GTCGGCTACAGTCCCGG 73 consensus_5200#0 GCCCGGCGCCGAGC-TCGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACA 104 ** ****** ** ******** ******* * * * ** ** * * consensus_5200#1 AGG-CTGAAG-TTGAAG-TGGCTGTG---TGCGCC--AGTTG-TG--TTCGATTT--G-- 340 consensus_5200#2 AGGTCTGAAGGTTGAAGGTGGCTGTGG--TGCGCCCAGGTTGGTGGTTTCGACTTTGG-- 129 consensus_5200#0 CCCTGCCAGAGCGGACTCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGAC 164 * ** * ** * * * ** ** * * * * * consensus_5200#1 -CCGATTT---CCTTTCTAGA--TCGTG-TTTGA-TT-TGC-TTCTTTTTTTTTTTGTCT 390 consensus_5200#2 -CCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTT-TGCCTTCTTTTTTTTTTTGTCT 187 consensus_5200#0 TCCAAGCGTAGGATCTCCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGC 224 ** * * ** * * * * * *** * * ** * consensus_5200#1 AAG-TAGTG-C--TCGA-TTTGCTGG-TGAGTGGTGACA-TCAA-TTTGCA-GTGTGTTG 441 consensus_5200#2 AAGGTAGTGTC--TCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTGTGTTG 245 consensus_5200#0 CAGGACCTGTTGATCGACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACG 284 ** ** **** * ****** * ** * * * * ** * consensus_5200#1 TGTATGGCCTAATTGCTTAATTCATTT--------------------------------- 468 consensus_5200#2 AGCGG------------------------------------------------------- 250 consensus_5200#0 GATGCATCGTAGTAGATGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGA 344 consensus_5200#1 ------------------------------------------------------------ consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 CCCAACCCTGTGTAGAACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCG 404 consensus_5200#1 ------------------------------------------------------------ consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 GTGCTTGCGCAGAGATAAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGG 464 consensus_5200#1 ------------------------------------------------------------ consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 AAGATTTGCGAGGGGGGGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGC 524 consensus_5200#1 ------------------------------------------------------------ consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 GGGATCACCCTTCTTAAGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTT 584 consensus_5200#1 ------------------------------------------------------------ consensus_5200#2 ------------------------------------------------------------ consensus_5200#0 CATGTTTGAGAATGAAGGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGAT 644 consensus_5200#1 ------------------------- consensus_5200#2 ------------------------- consensus_5200#0 GGAGGTATAATTTCACTAGTAAAGA 669 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||