cluster # 5204

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5204 cluster # 5204 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5204#0 length = 985 sequences # 2

consensus_5204#1 length = 818 sequences # 1

consensusID : consensus_5204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 985
fasta sequence

                              [CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGC-GGC-GGC-GGC-GGC-GGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGGTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATTGCCATGTAGTAGTTTTTTATTTTCA]

[+] EMBL AK111254             [CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGC GGC GGC GGC GGC GGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGGTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATTGCCATGTAGTAGTTTTTTATTTTCA]
[+] EMBL AU172861             [                                                GCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGCAGGCAGGCAGGCAGGCAGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCG ACCGGGGGTGGTGGCGGAGATGGCGNNGGAAGCCCAGGCCAAGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_5204#0
CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT
CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC
GGGAGGAGGACGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG
AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG
CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG
TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG
ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG
AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG
GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA
TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC
CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG
GTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTG
CGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATC
TCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCC
ATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGT
TCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATT
GCCATGTAGTAGTTTTTTATTTTCA

consensusID : consensus_5204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence

                              [CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTAAGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC]

[+] EMBL AK064134             [CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTAAGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC]




>consensus_5204#1
CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAA
CCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGG
AGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG
TCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG
ACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCG
CAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCG
CGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGG
CGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGC
CGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGA
AGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGA
GAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTA
AGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAG
AGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGA
TTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5204#0      CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT 60
consensus_5204#1      ------CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT 54
                            ******************************************************

consensus_5204#0      CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC 120
consensus_5204#1      CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC 114
                      ************************************************************

consensus_5204#0      GGGAGGAGGACGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG 180
consensus_5204#1      GGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG 174
                      ********* **************************************************

consensus_5204#0      AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG 240
consensus_5204#1      AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG 234
                      ************************************************************

consensus_5204#0      CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG 300
consensus_5204#1      CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG 294
                      ************************************************************

consensus_5204#0      TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG 360
consensus_5204#1      TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG 354
                      ************************************************************

consensus_5204#0      ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG 420
consensus_5204#1      ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG 414
                      ************************************************************

consensus_5204#0      AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG 480
consensus_5204#1      AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG 474
                      ************************************************************

consensus_5204#0      GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA 540
consensus_5204#1      GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA 534
                      ************************************************************

consensus_5204#0      TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC 600
consensus_5204#1      TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC 594
                      ************************************************************

consensus_5204#0      CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG 660
consensus_5204#1      CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG 654
                      ************************************************************

consensus_5204#0      GTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTG 720
consensus_5204#1      A--------CCCTAAGCCTAATGCTGGAAATGGTC--TGGACTTGGA---GAAATATTCC 701
                               * *  * * * *   *  ** ** **   *   * * *   ***** **  

consensus_5204#0      CGTGCTTCGGTGAC-CTGTATGCTCTTATT-CGATTATAGATTGTCATTTCGCCTG-TTG 777
consensus_5204#1      TGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCA 761
                       *  **  **  *  *   * * *   **  * ***  ** *   **     *    *  

consensus_5204#0      ATCTCTACCTCTTATGCGGAATTGGGGCAG-ATATAGAGTTTGAATCAGCAAATGTGCTT 836
consensus_5204#1      AGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGT-TGC-- 818
                      *    *  * ****** *    **  * *  ** *  ** *** *        * ***  

consensus_5204#0      TCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAG 896
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      TAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAA 956
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      AATTGCCATGTAGTAGTTTTTTATTTTCA 985
consensus_5204#1      -----------------------------