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Oryza sativa
cluster # 5204 cluster # 5204       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5204#0 length = 985 sequences # 2  
consensus_5204#1 length = 818 sequences # 1  

consensusID : consensus_5204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 985
fasta sequence
                              [CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGC-GGC-GGC-GGC-GGC-GGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGGTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATTGCCATGTAGTAGTTTTTTATTTTCA]

[+] EMBL AK111254             [CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGC GGC GGC GGC GGC GGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGGTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATTGCCATGTAGTAGTTTTTTATTTTCA]
[+] EMBL AU172861             [                                                GCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGCAGGCAGGCAGGCAGGCAGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCG ACCGGGGGTGGTGGCGGAGATGGCGNNGGAAGCCCAGGCCAAGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_5204#0 CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC GGGAGGAGGACGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG GTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTG CGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATC TCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCC ATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGT TCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATT GCCATGTAGTAGTTTTTTATTTTCA



consensusID : consensus_5204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence
                              [CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTAAGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC]

[+] EMBL AK064134             [CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTAAGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC]


>consensus_5204#1 CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAA CCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGG AGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG TCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG ACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCG CAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCG CGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGG CGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGC CGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGA AGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGA GAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTA AGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAG AGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGA TTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5204#0      CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT 60
consensus_5204#1      ------CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT 54
                            ******************************************************

consensus_5204#0      CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC 120
consensus_5204#1      CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC 114
                      ************************************************************

consensus_5204#0      GGGAGGAGGACGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG 180
consensus_5204#1      GGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG 174
                      ********* **************************************************

consensus_5204#0      AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG 240
consensus_5204#1      AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG 234
                      ************************************************************

consensus_5204#0      CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG 300
consensus_5204#1      CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG 294
                      ************************************************************

consensus_5204#0      TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG 360
consensus_5204#1      TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG 354
                      ************************************************************

consensus_5204#0      ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG 420
consensus_5204#1      ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG 414
                      ************************************************************

consensus_5204#0      AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG 480
consensus_5204#1      AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG 474
                      ************************************************************

consensus_5204#0      GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA 540
consensus_5204#1      GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA 534
                      ************************************************************

consensus_5204#0      TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC 600
consensus_5204#1      TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC 594
                      ************************************************************

consensus_5204#0      CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG 660
consensus_5204#1      CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG 654
                      ************************************************************

consensus_5204#0      GTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTG 720
consensus_5204#1      A--------CCCTAAGCCTAATGCTGGAAATGGTC--TGGACTTGGA---GAAATATTCC 701
                               * *  * * * *   *  ** ** **   *   * * *   ***** **  

consensus_5204#0      CGTGCTTCGGTGAC-CTGTATGCTCTTATT-CGATTATAGATTGTCATTTCGCCTG-TTG 777
consensus_5204#1      TGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCA 761
                       *  **  **  *  *   * * *   **  * ***  ** *   **     *    *  

consensus_5204#0      ATCTCTACCTCTTATGCGGAATTGGGGCAG-ATATAGAGTTTGAATCAGCAAATGTGCTT 836
consensus_5204#1      AGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGT-TGC-- 818
                      *    *  * ****** *    **  * *  ** *  ** *** *        * ***  

consensus_5204#0      TCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAG 896
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      TAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAA 956
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      AATTGCCATGTAGTAGTTTTTTATTTTCA 985
consensus_5204#1      -----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)