These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 985 fasta sequence [CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGC-GGC-GGC-GGC-GGC-GGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGGTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATTGCCATGTAGTAGTTTTTTATTTTCA] [+] EMBL AK111254 [CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGC GGC GGC GGC GGC GGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGGTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGATTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGTGCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAAAATTGCCATGTAGTAGTTTTTTATTTTCA] [+] EMBL AU172861 [ GCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGACGAGGCAGGCAGGCAGGCAGGCAGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCG ACCGGGGGTGGTGGCGGAGATGGCGNNGGAAGCCCAGGCCAAGGCGG ] consensusID : consensus_5204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTAAGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC] [+] EMBL AK064134 [CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCTCCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCCGGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGGTCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCGACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGGAGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGGGGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGCCGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAGACCCTAAGCCTAATGCTGGAAATGGTCTGGACTTGGAGAAATATTCCTGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCAAGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5204#0 CCAATCCAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT 60 consensus_5204#1 ------CAACGCTTCCTTCCTCGCAAAGCCTCTGCGAATCTCGCGCACGCAGAAACCGCT 54 ****************************************************** consensus_5204#0 CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC 120 consensus_5204#1 CCCAAACCCTAGACGCAATGGTGGTCACCATCGATCTCCGGGAGGTCACCATCGATCTCC 114 ************************************************************ consensus_5204#0 GGGAGGAGGACGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG 180 consensus_5204#1 GGGAGGAGGGCGAGGCGGCGGCGGCGGCGGCGATGAAGGCCATCGCTGGGAGGAGCGACG 174 ********* ************************************************** consensus_5204#0 AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG 240 consensus_5204#1 AGGAGGTCCTCGCGGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGG 234 ************************************************************ consensus_5204#0 CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG 300 consensus_5204#1 CGATCGACGCCGCGGCGGCGGCGGCGACGAAGGCCATCGCTGGGAGGAGCGACGAGGAGG 294 ************************************************************ consensus_5204#0 TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG 360 consensus_5204#1 TCCTCGCAGCGGTGCTCGCGCGCAAGGGTGGCCCTGTCCCGTTCCTCCAGGCGGCGATCG 354 ************************************************************ consensus_5204#0 ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG 420 consensus_5204#1 ACGTCGCGCAGCGGCGATCCGACCTGTTCCTCGACCCCTCCGCACCGGGGGTGGTGGCGG 414 ************************************************************ consensus_5204#0 AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG 480 consensus_5204#1 AGATGGCGGTGGAAGCCCAGGCCAAGGCGGAGGCGGAGGAGAGGCGGAAGAGGGCGAAGG 474 ************************************************************ consensus_5204#0 GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA 540 consensus_5204#1 GGGAGCCGAGGAAGGCGGAGGAGATGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGA 534 ************************************************************ consensus_5204#0 TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC 600 consensus_5204#1 TGCTGAAGGAGGAGGAGCCGATGAAGGCGGAGGAGATGCTGAAGGAGGAGCCGAGGACGC 594 ************************************************************ consensus_5204#0 CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG 660 consensus_5204#1 CGATGAGAGAGGCGGGGAGGGACAAGGTGGAGAGGGCAGCGGTAGTGGAGCGCGTAAGAG 654 ************************************************************ consensus_5204#0 GTGGGTGATCTCGCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTG 720 consensus_5204#1 A--------CCCTAAGCCTAATGCTGGAAATGGTC--TGGACTTGGA---GAAATATTCC 701 * * * * * * * ** ** ** * * * * ***** ** consensus_5204#0 CGTGCTTCGGTGAC-CTGTATGCTCTTATT-CGATTATAGATTGTCATTTCGCCTG-TTG 777 consensus_5204#1 TGGACTCAGGAAAGGCCAGAGGTTACCATAACCATTCCAGTTCCCCAAGGAACAAAATCA 761 * ** ** * * * * * ** * *** ** * ** * * consensus_5204#0 ATCTCTACCTCTTATGCGGAATTGGGGCAG-ATATAGAGTTTGAATCAGCAAATGTGCTT 836 consensus_5204#1 AGTCTTGTCACTTATGAGATTATGAAGAACCATCTGAAGGTTGGACTGAAGGGT-TGC-- 818 * * * ****** * ** * * ** * ** *** * * *** consensus_5204#0 TCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAG 896 consensus_5204#1 ------------------------------------------------------------ consensus_5204#0 TAGTTCTATAGTGGAGCTATAATCCTCAGATTTCGAGGTTGCAGATATGGCGGAGTATAA 956 consensus_5204#1 ------------------------------------------------------------ consensus_5204#0 AATTGCCATGTAGTAGTTTTTTATTTTCA 985 consensus_5204#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||