These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence [CGGCGGCGCTACGAAGACACAGACGCGACGGCGGGGGCGGAGCACGGCGCGACCTAGAGGCGACGGCTACGGCGACGGCGACGACACAGCTCTCTTCTCCGGCCGCCACCTTCTCTCCAATGAGCACGCTTCCCTTCCCCCTCTCCCTTCCTCTTCAAAGTTAGGGTAGGGTTTCCTTCTCTTCTCTCTTTCCGGCTTTCCCGTCGTCGCACGCACCGTGCCGTAGGGGCCGGCCGTCTGGTCGTGCTCCGGCGCCAATGCCGACCGCGTGTTCAGCTTCAGCTCTGGCTTGGGGCTTGGGCTTGGGTGGCTTCGGCTTCGGCAGCGCTTTGTCCTTGTTCGGCTCTGGCGGTGGCATTGCCGGGACACGGGAGGGTTCTTGGACGCCAGAGAGGAGAGGAGAGGAGGAGAAGGAGGAGGAGAGGGTTCTTGGTTCTTGGCCCGTAGCCTTCAAAGTGTCGGCACCCTCCACGTCGGAATCTGAGTCATGTAGTTGCAGTTGCAGGTTTGCGAAATCTGAAGGAATTCAGAGTCATCTAGNTGCAGGTTCCATGAAATCGACTGGTAGGGAAATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAAGTTCCTGAAGATTTATTGCTTCAGACAGCATGACGAAAGTCAGGGCATCATTATAGCGTCTCCTGCTGCTCAGCTCATTNCACTCATAAGCCTGCTTAGTTTGGGATGGATCTGAGGTACAAAAAANGNGTTAAACTGAGNGCTCCACACAGGGAANGGGGGAATTTGANACTGGCGAAAAAAAAAAAAAAAAAAAAAAAACGGC] [+] EMBL CA764538 [CGGCGGCGCTACGAAGACACAGACGCGACGGCGGGGGCGGAGCACGGCGCGACCTAGAGGCGACGGCTACGGCGACGGCGACGACACAGCTCTCTTCTCCGGCCGCCACCTTCTCTCCAATGAGCACGCTTCCCTTCCCCCTCTCCCTTCCTCTTCAAAGTTAGGGTAGGGTTTCCTTCTCTTCTCTCTTTCCGGCTTTCCCGTCGTCGCACGCACCGTGCCGTAGGGGCCGGCCGTCTGGTCGTGCTCCGGCGCCAATGCCGACCGCGTGTTCAGCTTCAGCTCTGGCTTGGGGCTTGGGCTTGGGTGGCTTCGGCTTCGGCAGCGCTTTGTCCTTGTTCGGCTCTGGCGGTGGCATTGCCGGGACACGGGAGGGTTCTTGGACGCCAGAGAGGAGAGGAGAGGAGGAGAAGGAGGAGGAGAGGGTTCTTGGTTCTTGGCCCGTAGCCTTCAAAGTGTCGGCACCCTCCACGTCGGAATCTGAGTCATGTAGTTGCAGTTGCAGGTTTGCGAAATCTGAAGGAATTCAGAGTCATCTAGNTGCAGGTTCCATGAAATCGACTGGTAGGGAAATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAAGTTCCTGAAGATTTATTGCTTCAGACAGCATGACGAAAGTCAGGGCATCATTATAGCGTCTCCTGCTGCTCAGCTCATTNCACTCATAAGCCTGCTTAGTTTGGGATGGATCTGAGGTACAAAAAANGNGTTAAACTGAGNGCTCCACACAGGGAANGGGGGAATTTGANACTGGCGAAAAAAAAAAAAAAAAAAAAAAAACGGC] consensusID : consensus_521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GACGCGACGCGGGGCAGCGCGCGGCGCGTGGCACGACCCGGAGGCGACGGCGATGGCACGGCTCTCTCCTCCGGCCGCCACCTTCTCTCCGGTTCCTTGAAATCGACTGGTAGGGATATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAGGTTCCTGAAGATTTATTGCTTCAGACAGCATGATGAAAGTCAGGGCATCATTATAGTGTCTCCTGCTGCTCAGCTCATTCCACTCATAAACCTGTTTAGTTTGTGATTTATCTGAGTTACTAAGAATGTGTTTAAACTGAGTTCTCCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCTTTTTTTTCTTTGTACCCATCACTGTTTTCCTGTACTTCTAATCTGCAATACTGTCCCGGCAAGCGTTGAAGCGTCGCTGCTCAGATTAAAAAAAAAA] [+] EMBL BI801444 [GACGCGACGCGGGGCAGCGCGCGGCGCGTGGCACGACCCGGAGGCGACGGCGATGGCACGGCTCTCTCCTCCGGCCGCCACCTTCTCTCCGGTTCCTTGAAATCGACTGGTAGGGATATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAGGTTCCTGAAGATTTATTGCTTCAGACAGCATGATGAAAGTCAGGGCATCATTATAGTGTCTCCTGCTGCTCAGCTCATTCCACTCATAAACCTGTTTAGTTTGTGATTTATCTGAGTTACTAAGAATGTGTTTAAACTGAGTTCTCCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCTTTTTTTTCTTTGTACCCATCACTGTTTTCCTGTACTTCTAATCTGCAATACTGTCCCGGCAAGCGTTGAAGCGTCGCTGCTCAGATTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_521#0 CGGCGGCGCTACGAAGACACAGACGCGACGGCGGGGGCGGAGCACGGCGCGACCTAGAGG 60 consensus_521#1 ------------------------------------------------------------ consensus_521#0 CGACGGCTACGGCGACGGCGACGACACAGCTCTCTTCTCCGGCCGCCACCTTCTCTCCAA 120 consensus_521#1 ------------------------------------------------------------ consensus_521#0 TGAGCACGCTTCCCTTCCCCCTCTCCCTTCCTCTTCAAAGTTAGGGTAGGGTTTCCTTCT 180 consensus_521#1 ------------------------------------------------------------ consensus_521#0 CTTCTCTCTTTCCGGCTTTCCCGTCGTCGCACGCACCGTGCCGTAGGGGCCGGCCGTCTG 240 consensus_521#1 ------------------------------------------------------------ consensus_521#0 GTCGTGCTCCGGCGCCAATGCCGACCGCGTGTTCAGCTTCAGCTCTGGCTTGGGGCTTGG 300 consensus_521#1 ------------------------------------------------------------ consensus_521#0 GCTTGGGTGGCTTCGGCTTCGGCAGCGCTTTGTCCTTGTTCGGCTCTGGCGGTGGCATTG 360 consensus_521#1 ------------------------------------------------------------ consensus_521#0 CCGGGACACGGGAGGGTTCTTGGACGCCAGAGAGGAGAGGAGAGGAGGAGAAGGAGGAGG 420 consensus_521#1 ------------------------------------------------------------ consensus_521#0 AGAGGGTTCTTGGTTCTTGGCCCGTAGCCTTCAAAGTGTCGGCACCCTCCACGTCGGAAT 480 consensus_521#1 -----------------------------------GACGCGACGCGGGGCAGCGCGCGGC 25 * ** * * ** ** consensus_521#0 CTGAGTCATGTAGTTGCAGTTGCAGGTTTGCGAAATCTGAAGGAATTCAGAGTCATCTAG 540 consensus_521#1 GCGTGGCACGACCCGGAGGCGACGGCGATGGCACGGCTCTCTCCTCCGGCCGCCACCTTC 85 * * ** * * * * * ** * ** * ** ** consensus_521#0 NTGCAGGTTCCATGAAATCGACTGGTAGGGAAATTCCAGATAATTTATTTGATGGTAGCA 600 consensus_521#1 TCTCCGGTTCCTTGAAATCGACTGGTAGGGATATTCCAGATAATTTATTTGATGGTAGCA 145 * ****** ******************* **************************** consensus_521#0 ATTTTCTGAAGTTCCTGAAGATTTATTGCTTCAGACAGCATGACGAAAGTCAGGGCATCA 660 consensus_521#1 ATTTTCTGAGGTTCCTGAAGATTTATTGCTTCAGACAGCATGATGAAAGTCAGGGCATCA 205 ********* ********************************* **************** consensus_521#0 TTATAGCGTCTCCTGCTGCTCAGCTCATTNCACTCATAAGCCTGCTTAGTTTGGGATGGA 720 consensus_521#1 TTATAGTGTCTCCTGCTGCTCAGCTCATTCCACTCATAAACCTGTTTAGTTTGTGATTTA 265 ****** ********************** ********* **** ******** *** * consensus_521#0 TCTGAGGTACAAAAAANGNGTT-AAACTGAGNGCTCC-ACACAG-GGAANGGGGGA-ATT 776 consensus_521#1 TCTGAGTTACTAAGAATGTGTTTAAACTGAGTTCTCCCACACAGTGAAATGTGTGATATT 325 ****** *** ** ** * *** ******** **** ****** * ** * * ** *** consensus_521#0 TGANACTGGCGAAAAAAAAAAAAAAAAAAAAAAAACGGC--------------------- 815 consensus_521#1 TGATACTGTGGACATCTTTTTTTTCTTTGTACCCATCACTGTTTTCCTGTACTTCTAATC 385 *** **** ** * * * * consensus_521#0 ------------------------------------------------------ consensus_521#1 TGCAATACTGTCCCGGCAAGCGTTGAAGCGTCGCTGCTCAGATTAAAAAAAAAA 439 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||