These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CCCTCTTACTCATACCCCTTGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAAGGTGCATGATTGCATCCCAGGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAAAAAACAGAGAAAAAACAAAAAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACACTTGCTGCTGATGGTGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACGTTGAAGGCGACGTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGCGGGCGGCGCCGACGTCGGCGCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCGCCACCACGGCGCCGT] [+] EMBL CB678786 [CCCTCTTACTCATACCCCTTGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAAGGTGCATGATTGCATCCCAGGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAAAAAACAGAGAAAAAACAAAAAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACACTTGCTGCTGATGGTGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACGTTGAAGGCGACGTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGCGGGCGGCGCCGACGTCGGCGCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCGCCACCACGGCGCCGT] consensusID : consensus_5213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GCTGAGGCAACGAAGGTGTTCGTCCATGGCGCCGCAGCTGGCCACGCTGGCGGAGGAGCCGGGGGGCGGGGAGGAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAGCGCTCCACCGCTGGGCGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGAGGTGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCTTGAAGGCGACGTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC] [+] EMBL CB678785 [GCTGAGGCAACGAAGGTGTTCGTCCATGGCGCCGCAGCTGGCCACGCTGGCGGAGGAGCCGGGGGGCGGGGAGGAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAGCGCTCCACCGCTGGGCGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGAGGTGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCTTGAAGGCGACGTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC] consensusID : consensus_5213#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGTTGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCAGGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAAAAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGNAATTAATTAA] [-] EMBL AU173007 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGTTGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCAGGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAAAAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGNAATTAATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5213#0 -----------------------------------------CCCTCTTACTCATACCCCT 19 consensus_5213#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGT 60 consensus_5213#1 ----------------------------------------GCTGAGGCAACGAAGGTGTT 20 * * * * consensus_5213#0 TGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAAGGTGCATGATTGCATCCCA 79 consensus_5213#2 TGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCA 120 consensus_5213#1 CGTCCATGGCGCCGCAGCTGGCCACGC-------TGGCGGAGGAGCCGGGGGGCGGGGAG 73 * * *** * ** ** * *** ** * ** consensus_5213#0 GGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAAAAAACAGAGAAAAAACAAA 139 consensus_5213#2 GGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAA 180 consensus_5213#1 GAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAG---CGCTCCACCGCTGGG 130 * * * * * * * ** ** * * * consensus_5213#0 AAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACACTTGCTGCTGATGGTGATT 199 consensus_5213#2 AAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATT 240 consensus_5213#1 CGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGAGGTGGGGATT 190 * * ** * *** * * ** * ** * * *** **** consensus_5213#0 AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC 259 consensus_5213#2 AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC 300 consensus_5213#1 AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC 250 ************************************************************ consensus_5213#0 ACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTT 319 consensus_5213#2 ACTAATTAGGAGACAGNAATTAATTAA--------------------------------- 327 consensus_5213#1 ACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTT 310 **************** ********** consensus_5213#0 GGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCT 379 consensus_5213#2 ------------------------------------------------------------ consensus_5213#1 GGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCT 370 consensus_5213#0 CCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACGTTGAAGGCGAC 439 consensus_5213#2 ------------------------------------------------------------ consensus_5213#1 CCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCTTGAAGGCGAC 430 consensus_5213#0 GTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGCGGGCGGCGCCGACGTCGGC 499 consensus_5213#2 ------------------------------------------------------------ consensus_5213#1 GTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC------------------------ 466 consensus_5213#0 GCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCGCCACCACGGCGCCGT 555 consensus_5213#2 -------------------------------------------------------- consensus_5213#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||