These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2090 fasta sequence [CGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTACCACCAAAAGAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTGCATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAAACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATTTTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGAAATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAAA] [+] EMBL AK071085 [CGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTACCACCAAAAGAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTGCATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAAACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATTTTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGAAATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAAC ] [+] EMBL AU173030 [ AATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAAA] consensusID : consensus_5215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [AGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTG] [+] EMBL AU173029 [AGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5215#0 CGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCG 60 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 GCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGC 120 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 AGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCC 180 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 CCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCG 240 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 GCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTT 300 consensus_5215#1 --------------------------AGTGTTAACAAGGATCAAATAGCCAAATGGATTT 34 ********************************** consensus_5215#0 TGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGAT 360 consensus_5215#1 TGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGAT 94 ************************************************************ consensus_5215#0 TCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATG 420 consensus_5215#1 TCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATG 154 ************************************************************ consensus_5215#0 GTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATT 480 consensus_5215#1 GTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATT 214 ************************************************************ consensus_5215#0 TAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATG 540 consensus_5215#1 TAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATG 274 ************************************************************ consensus_5215#0 GAAGGT--ATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAA 598 consensus_5215#1 GAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGAC-----------CTACGCTTTGT 323 **** * **** * * * ***** * * * ** ** consensus_5215#0 AAATATCTATGCATTTACA-TCTGCTACCTGTGTTTAGTTTTAACTGTACC--ACCAAAA 655 consensus_5215#1 ATA---CTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGA 380 * * ** **** * ** ****** ** ** ** ** * * ** * * consensus_5215#0 GAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACC 715 consensus_5215#1 AAAGGCCAAGCAATACATTCTTAGTTGCCAG-TCATACGATGGTG--------------- 424 * ** *** ** * ** ** * * ** consensus_5215#0 TCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTG 775 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 CATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCT 835 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 GGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATG 895 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 TGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTT 955 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 GCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAA 1015 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 ACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATT 1075 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 TTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACT 1135 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 GTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGA 1195 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 AATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTG 1255 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 GACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGG 1315 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 TGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGC 1375 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 AGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATC 1435 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 ATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGG 1495 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 TTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGT 1555 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 CCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCT 1615 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 CTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATAT 1675 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 CTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCC 1735 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 ACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATC 1795 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 TTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACA 1855 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 TACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGT 1915 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 CATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCT 1975 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 ATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGC 2035 consensus_5215#1 ------------------------------------------------------------ consensus_5215#0 AGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAAA 2090 consensus_5215#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||