cluster # 5218

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Oryza sativa
cluster # 5218 cluster # 5218 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5218#0 length = 672 sequences # 2

consensus_5218#1 length = 657 sequences # 1

consensusID : consensus_5218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence

                              [TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAGGGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCTTGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGACTTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAATCCCAGATATGGG]

[+] EMBL CA762828             [TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAGGGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCTTGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGACTTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAATCCCAGATATGGG]
[+] EMBL CA762829             [TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAGGGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCTTGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGACTTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAATCCCAGATATGGG]




>consensus_5218#0
TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAG
GGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCT
TGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGAC
TTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCA
TGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACAC
CTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTC
CTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCA
CATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGA
GGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGT
ATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGAC
GATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAAT
CCCAGATATGGG

consensusID : consensus_5218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGGGGGTTAAATGAAACACAAAAATGATCCGGAGTGCGCAGGAGTACTGGAGTATCTCCATTGGATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTATAACAACTCACGGGAACACACTGGGCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCCGTGGGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGACACCTGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGGCCATGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGGCACCTGTGCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACTAGACCAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCAGTAGCTATAACCGGGCGTATCTGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACAGTCCCGCCGGGGACACGATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGGACCC]

[+] EMBL CA761850             [TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGGGGGTTAAATGAAACACAAAAATGATCCGGAGTGCGCAGGAGTACTGGAGTATCTCCATTGGATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTATAACAACTCACGGGAACACACTGGGCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCCGTGGGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGACACCTGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGGCCATGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGGCACCTGTGCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACTAGACCAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCAGTAGCTATAACCGGGCGTATCTGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACAGTCCCGCCGGGGACACGATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGGACCC]




>consensus_5218#1
TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGG
GGGTTAAATGAAACACAAAAATGATCCGGAGTGCGCAGGAGTACTGGAGTATCTCCATTG
GATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTATAACAACTCACGGGAACACACTGG
GCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCCGTG
GGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGACACC
TGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGGCCA
TGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGGCAC
CTGTGCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACTAGAC
CAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCAGTAGCTATAACCGGGCGTATC
TGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACAGTCCCGCCGGGGACACG
ATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGGACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5218#0      TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAG 60
consensus_5218#1      TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGG 60
                      ************** *************************** *** *********** *

consensus_5218#0      GGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCT 120
consensus_5218#1      GGGTTAAATGAAACACAAAAATGATCCGGAGTGCGC-AGGAGTACTG-GAGTATCTCCAT 118
                      ********    *************  *  **** * ********** ********** *

consensus_5218#0      TGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGAC 180
consensus_5218#1      TGGATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTAT-AACAACTCACGGGAACACAC 177
                      ***********  **** *** ************ ****  * ****** * * *** **

consensus_5218#0      TTGGGCTTTATA-ACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCC 239
consensus_5218#1      TGGGCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCC 237
                      * **  ****** *** *************  ****************************

consensus_5218#0      ATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGA-AC 298
consensus_5218#1      GTGGGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGAC 297
                       ************ ********    ******** * ******* ****** ***** **

consensus_5218#0      ACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGG 358
consensus_5218#1      ACCTGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGG 357
                      ********************   **** **** * *** ***** ******** ******

consensus_5218#0      TCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGG 418
consensus_5218#1      CCATGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGG 417
                       * *** **********  *** *** ** ***** ***   ******* **   *****

consensus_5218#0      CACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAA-ATC 477
consensus_5218#1      CACCTGT-GCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACT 476
                      *** **  * ***** * ** ****  ** * ***  ***** ******* *  *  *  

consensus_5218#0      AGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGA 537
consensus_5218#1      AGACCAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCA--GTAGCTATAACCGGG 534
                      ***  ** *  ***  ******* ****  *********  **   *    *  *  ** 

consensus_5218#0      CGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGT 597
consensus_5218#1      CGTATCTGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACA-GTCCCGCCGG 593
                      ***** **** ** * ** *   ****** * ****** ** **  * * *****   * 

consensus_5218#0      GACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGC 657
consensus_5218#1      GGACACGATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGG 653
                      *   *   **** ***   *******   * *  *** * **  **   * ** ** ** 

consensus_5218#0      AATCCCAGATATGGG 672
consensus_5218#1      ACCC----------- 657
                      *  *