cluster # 5235

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Oryza sativa
cluster # 5235 cluster # 5235 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5235#0 length = 883 sequences # 3

consensusID : consensus_5235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 883
fasta sequence

                              [ACCACATTACTCCTCCGGAGCCTCGTCTCCAGGTACTCGACCACGTCGCCGACGGCCGGGAGCACCTTCCTGGCGGCGTCGAGCTCGCCGAACCGCTCCGCCCACGCCGCCAGCAGCGGCGTCCTGGCGGCGTCGAGCACCCTGGTCCCCGTGAGCGCCTCGTTCGCCCTCGTCCGCGGGATCACCGACCCCAGCGTGACGTCGACGAGCCCCGGGGCGTCGCCGCCGAAGAAGGGCTTCCCCTCCGCGGCGGCGAGGGCCCCCTCCAGCGCCCCCACCGCGGCGGCCATCCGCGCCATCCCCTCCGCCCTCTCCCCCTCCGTGCTCCCCAGGTACGCCGGCCTCCACGACGCCACGAACTCGTCGTCGACGTGGGCGGCCCAGAAGCGGGCGGCGGCGCGGGCGAGGGGGTCGTCGGCGGGGGGGAGGAGCGGGGCGCCGCCGCCGCCGGGGAAGGGGAAGGCGTCGTCGATGTACTCGAGGATGACCCGGGACTCGCAGACGGGGCGGCCGCGGTGGATGAGGACGGGGACCTTGGCGTGGACGGGGTTGGCGGCGAGGAGGAGGTCGGTCTTGCGGTCGAGGTCGACGGCGACGAGGTCGTAGGTGAGGCCTCGCAGGGCGAGGGCGAGCTCCACCCTGGTGACGAACGGGCTAGGGTTCGTGCTGCCGAGCAGCTTCAGCTCGTGATCCGGTGATCCTCCTCCTCCGGCGGCGGCGGCGGCCATCGTCGTCGCGCCTCTGCCGATCGAGCGATCACGTGTTGGGCGGATTGGATTTTTAGTTATAGACGGGTGCTGGATCGAGATGGTTGTTCTGGAGTGGGAAGTCCGCGGGTGGATTGCGTCATCCGTGATGTCAGGACAGGCGAATGTATCTTCCA]

[+] EMBL AK106938             [ACCACATTACTCCTCCGGAGCCTCGTCTCCAGGTACTCGACCACGTCGCCGACGGCCGGGAGCACCTTCCTGGCGGCGTCGAGCTCGCCGAACCGCTCCGCCCACGCCGCCAGCAGCGGCGTCCTGGCGGCGTCGAGCACCCTGGTCCCCGTGAGCGCCTCGTTCGCCCTCGTCCGCGGGATCACCGACCCCAGCGTGACGTCGACGAGCCCCGGGGCGTCGCCGCCGAAGAAGGGCTTCCCCTCCGCGGCGGCGAGGGCCCCCTCCAGCGCCCCCACCGCGGCGGCCATCCGCGCCATCCCCTCCGCCCTCTCCCCCTCCGTGCTCCCCAGGTACGCCGGCCTCCACGACGCCACGAACTCGTCGTCGACGTGGGCGGCCCAGAAGCGGGCGGCGGCGCGGGCGAGGGGGTCGTCGGCGGGGGGGAGGAGCGGGGCGCCGCCGCCGCCGGGGAAGGGGAAGGCGTCGTCGATGTACTCGAGGATGACCCGGGACTCGCAGACGGGGCGGCCGCGGTGGATGAGGACGGGGACCTTGGCGTGGACGGGGTTGGCGGCGAGGAGGAGGTCGGTCTTGCGGTCGAGGTCGACGGCGACGAGGTCGTAGGTGAGGCCTCGCAGGGCGAGGGCGAGCTCCACCCTGGTGACGAACGGGCTAGGGTTCGTGCTGCCGAGCAGCTTCAGCTCGTGATCCGGTGATCCTCCTCCTCCGGCGGCGGCGGCGGCCATCGTCGTCGCGCCTCTGCCGATCGAGCGATCACGTGTTGGGCGGATTGGATTTTTAGTTATAGACGGGTGCTGGATCGAGATGGTTGTTCTGGAGTGGGAAGTCCGCGGGTGGATTGCGTCATCCGTGATGTCAGGACAGGCGAATGTATCTTCC ]
[+] EMBL CB684470             [                       CGTCTCCAGGTACTCGACCACGTCGCCGACGGCCGGGAGCACCTTCCTGGCGGCGTCGAGCTCGCCGAACCGCTCCGCCCACGCCGCCAGCAGCGGCGTCCTGGCGGCGTCGAGCACCCTGGTCCCCGTGAGCGCCTCGTTCGCCCTCGTCCGCGGGATCACCGACCCCAGCGTGACGTCGACGAGCCCCGGGGCGTCGCCGCCGAAGAAGGGCTTCCCCTCCGCGGCGGCGAGGGCCCCCTCCAGCGCCCCCACCGCGGCGGCCATCCGCGCCATCCCCTCCGCCCTCTCCCCCTCCGTGCTCCCCAGGTACGCCGGCCTCCACGACGCCACGAACTCGTCGTCGACGTGGGCGGCCCAGAAGCGGGCGGCGGCGCGGGCGAGGGGGTCGTCGGCGGGGGGGAGGAGCGGGGCGCC CCCCCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB684471             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAGGCGTCGTCGATGTACTCGAGGATGACCCGGGACTCGCAGACGGGGCGGCCGCGGTGGATGAGGACGGGGCCCTTGGCGTGGACGGGGTTGGCGGCGAGGAGGAGGTCGGTCTTGCGGTCGAGGTCGACGGCGACGAGGTCGTAGGTGAGCCCTCGCAGGGCGAGGGCGAGCTCCCCCCTGGTGACGAACGGGCTAGGGTTCGTGCTGCCGAGCAGCTTCAGCTCGTGATCCGGTGATCCTCCTCCTCCGGCGGCGGCGGCGGCCATCGTCGTCGCGCCTCTGCCGATCGAGCGATCACGTGTTGGGCGGATTGGATTTTTAGTTATAGACGGGTGCTGGATCGAGATGGTTGTTCTGGAGTGGGAAGTCCGCGGGTGGATTGCGTCATCCGTGATGTCAGGACAGGGGAATGTATCTTCCA]




>consensus_5235#0
ACCACATTACTCCTCCGGAGCCTCGTCTCCAGGTACTCGACCACGTCGCCGACGGCCGGG
AGCACCTTCCTGGCGGCGTCGAGCTCGCCGAACCGCTCCGCCCACGCCGCCAGCAGCGGC
GTCCTGGCGGCGTCGAGCACCCTGGTCCCCGTGAGCGCCTCGTTCGCCCTCGTCCGCGGG
ATCACCGACCCCAGCGTGACGTCGACGAGCCCCGGGGCGTCGCCGCCGAAGAAGGGCTTC
CCCTCCGCGGCGGCGAGGGCCCCCTCCAGCGCCCCCACCGCGGCGGCCATCCGCGCCATC
CCCTCCGCCCTCTCCCCCTCCGTGCTCCCCAGGTACGCCGGCCTCCACGACGCCACGAAC
TCGTCGTCGACGTGGGCGGCCCAGAAGCGGGCGGCGGCGCGGGCGAGGGGGTCGTCGGCG
GGGGGGAGGAGCGGGGCGCCGCCGCCGCCGGGGAAGGGGAAGGCGTCGTCGATGTACTCG
AGGATGACCCGGGACTCGCAGACGGGGCGGCCGCGGTGGATGAGGACGGGGACCTTGGCG
TGGACGGGGTTGGCGGCGAGGAGGAGGTCGGTCTTGCGGTCGAGGTCGACGGCGACGAGG
TCGTAGGTGAGGCCTCGCAGGGCGAGGGCGAGCTCCACCCTGGTGACGAACGGGCTAGGG
TTCGTGCTGCCGAGCAGCTTCAGCTCGTGATCCGGTGATCCTCCTCCTCCGGCGGCGGCG
GCGGCCATCGTCGTCGCGCCTCTGCCGATCGAGCGATCACGTGTTGGGCGGATTGGATTT
TTAGTTATAGACGGGTGCTGGATCGAGATGGTTGTTCTGGAGTGGGAAGTCCGCGGGTGG
ATTGCGTCATCCGTGATGTCAGGACAGGCGAATGTATCTTCCA

clustalw multiple alignements is not computed in this case