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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1183 fasta sequence
[CCAAATTTTTTTCCCTCTCTTCTCCCAACAACACACCATCGAGCAAAGCAAAGGCGAGAGGAGGAGAAGACGAGGAGTTTTCTCCCAATCCTGAGGGCTTGCAAGCAAAAATGGCCCCCCTCCCAACCCCACCACCACCATCCGCCCCTTCCTCCGCGCCCCCTTTCAAATCCAACGCCTCGAGCTCTCGCCCCAACCGCGCGCCGCCCGAGGGCGCGCCCACCTCGCCGGCGGCGGCCACCAGGCCGCCACCGTTCGCCATGGTCCCGGCGGTGTCCGAGGCCGTCCTCGCGGTGTTCGACGTCTCCACCACGCTCCGCTCGCAGGGGTACCTCGCCGGGCAGGAGCTGCCCAGCATCACCCTCCCCGAGGACCGCGCCCCGGAGGTGTTCGAGCGGCTGCTCGGGTCCTTCCTCGCGCAGTCGCATGGGCCCGGCGTGCTCCCGCCGCGCCCCATGCCTCCCCTGCTCGGGGACGGCACCCCCGTGGGGCTGCTCCGCCTGTACCTCGCCGTCAGGGCGTGCGGCGGGTTCGAGGCCGTGCGTTCGTGGGCGGCCGCCGCCGAGATGGCCGGCCTCAACCCCGCCATGGACGTCCCCATCATGCTGGTGTACCACAAGTACCTCTGCCCCCTGGAGGCGAGCTTCCTCAGGGCCCAGAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTTCCTCGCGCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGAGAACCTCGTGGGGATGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCGCTCCGGCAGGAACGCCGCCGACAACCACCTCTCCATGGCGTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGGTGATGTGACAATCAAGCAGAAAGAGGTAAACAAGAAACTACATTACAAAACTTGGAATCGCAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTATTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTATGAGACTCGGTCTATTGCACTTGATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGT]
[+] EMBL AK108348 [CCAAATTTTTTTCCCTCTCTTCTCCCAACAACACACCATCGAGCAAAGCAAAGGCGAGAGGAGGAGAAGACGAGGAGTTTTCTCCCAATCCTGAGGGCTTGCAAGCAAAAATGGCCCCCCTCCCAACCCCACCACCACCATCCGCCCCTTCCTCCGCGCCCCCTTTCAAATCCAACGCCTCGAGCTCTCGCCCCAACCGCGCGCCGCCCGAGGGCGCGCCCACCTCGCCGGCGGCGGCCACCAGGCCGCCACCGTTCGCCATGGTCCCGGCGGTGTCCGAGGCCGTCCTCGCGGTGTTCGACGTCTCCACCACGCTCCGCTCGCAGGGGTACCTCGCCGGGCAGGAGCTGCCCAGCATCACCCTCCCCGAGGACCGCGCCCCGGAGGTGTTCGAGCGGCTGCTCGGGTCCTTCCTCGCGCAGTCGCATGGGCCCGGCGTGCTCCCGCCGCGCCCCATGCCTCCCCTGCTCGGGGACGGCACCCCCGTGGGGCTGCTCCGCCTGTACCTCGCCGTCAGGGCGTGCGGCGGGTTCGAGGCCGTGCGTTCGTGGGCGGCCGCCGCCGAGATGGCCGGCCTCAACCCCGCCATGGACGTCCCCATCATGCTGGTGTACCACAAGTACCTCTGCCCCCTGGAGGCGAGCTTCCTCAGGGCCCAGAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTTCCTCGCGCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGAGAACCTCGTGGGGATGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCGCTCCGGCAGGAACGCCGCCGACAACCACCTCTCCATGGCGTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGGTGATGTGACAATCAAGCAGAAAGAGGTAAACAAGAAACTACATTACAAAACTTGGAATCGCAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTATTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTATGAGACTCGGTCTATTGCACTTGATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGT]
consensusID : consensus_5238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1008 fasta sequence
[GTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGAGTGGTCTTACAACTGAGGATGGACAGTATGATGGATGGGATGATCAACAATCTGCAGGTGGGAGCAGTAACTGGAATTCTCGTGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGAAGCCTTCATTACCTTATGAAGATCCAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAACTCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACAAGTGCAACTGTGAAGTCCCAGGTTCCACTTCTTGTGTCAGATTTCATGTGGCAGAGAAAAAGACCGAGCTGAAGCGTGAAATGGGCTCATCATACTATGCAATGAAGTTTGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGATGAAGAAAAGAAGTTTGAGACCATTGTCCAGCAGAATCTGCCTTCATCTAAGTACAATTTCTGGGACAAGCTGCGTGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAACAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAGAATCGAGTAGCTCAACATGCTAATGGTGTAGATAGTGATGATGACTCAATTGAACCTGCCTTCCTACGCCTTCGTCAAGACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAAAATCAGTCTTAGGGTGATAGTCTTCTATAAGTAACTGGTGGCTCCAGTTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGTTCATTTATTTTTATCTTCACCAATTGGTTACTGGACTGGAGACGGTAAGTGAGCTTCAATTGGGAATCTCACTGAGACTTGG-TGGTGGTTTTTGTGAATA-CCTCTGTGTGGCGCGTTGCCCGTTTACCTTAAAATCTCAATGCAACTGGGGTTGA]
[+] EMBL AK059905 [GTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGAGTGGTCTTACAACTGAGGATGGACAGTATGATGGATGGGATGATCAACAATCTGCAGGTGGGAGCAGTAACTGGAATTCTCGTGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGAAGCCTTCATTACCTTATGAAGATCCAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAACTCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACAAGTGCAACTGTGAAGTCCCAGGTTCCACTTCTTGTGTCAGATTTCATGTGGCAGAGAAAAAGACCGAGCTGAAGCGTGAAATGGGCTCATCATACTATGCAATGAAGTTTGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGATGAAGAAAAGAAGTTTGAGACCATTGTCCAGCAGAATCTGCCTTCATCTAAGTACAATTTCTGGGACAAGCTGCGTGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAACAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAGAATCGAGTAGCTCAACATGCTAATGGTGTAGATAGTGATGATGACTCAATTGAACCTGCCTTCCTACGCCTTCGTCAAGACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAAAATCAGTCTTAGGGTGATAGTCTTCTATAAGTAACTGGTGGCTCCAGTTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGTTCATTTATTTTTATCTTCACCAATTGGTTACTGGACTGGAGACGGTAAGTGAGCTTCAATTGGGAATCTCACTGAGACTTGG TGGTGGTTTTTGTGAATA CCTCTGTGTGGCGCGTTGCCCGTTTACCTTAAAATCTCAATGCAACTG ]
[+] EMBL CA767168 [ GGATGATCAACAATCTGCAGGTGGGAGCAGTAACTGGAATTCTCGTGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGAAGCCTTCATTACCTTATGAAGATCCAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAACTCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACAAGTGCAACTGTGAAGTCCCAGGTTCCACTTCTTGTGTCAGATTTCATGTGGCAGAGAAAAAGACCGAGCTGAAGCGTGAAATGGGCTCATCATACTATGCAATGAAGTTTGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGATGAAGAAAAGAAGTTTGAGACCATTGTCCAGCAGAATCTGCCTTCATCTAAGTACAATTTCTGGGTCAAGCTGCGCGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAACAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAGAATCGAGTAGCTCAACATGCTAATGGTGTAGATAGTGATGATGACTCAATTGAACCTGCCTTCCTACGCCTTCGTCAAGACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAAAATCAGTCTTANGGTGATAGTCTTCTATAAGTAACTGGTGGCTNCAGNTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGGTCATTTATTTTTATCTTCACCAANTGGNTACTGGACTGGAGACGGTAAGTGAGCTTCAATTGGGAATCTCACTGAGACTTGGNGGGGGGTTTTTGGGAATACCCTCTGNGNGGCGCGTTGNCCGGTTACCNTNAAATCTCAANGCAACTGGGGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5238#0 CCAAATTTTTTTCCCTCTCTTCTCCCAACAACACACCATCGAGCAAAGCAAAGGCGAGAG 60
consensus_5238#1 ------------------------------------------------------------
consensus_5238#0 GAGGAGAAGACGAGGAGTTTTCTCCCAATCCTGAGGGCTTGCAAGCAAAAATGGCCCCCC 120
consensus_5238#1 -----------------------------------------------------GTTGATG 7
*
consensus_5238#0 TCCCAACCCCACCACCACCATCCGCCCCTTCCTCCGCGCCCCCTTTCAAATCCAACGCCT 180
consensus_5238#1 TTCCGCCGCCAG-ATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTG-CGCAT 65
* ** * *** * * ** * * * ** *** * ** * *** *
consensus_5238#0 CGAGCTCTCGCCCCAACCGCGCGCCGCCCGAGGGCGCGCCCACCTCGCCGGCGGCGGCCA 240
consensus_5238#1 CG---CCTGAGCCCGAGGCAACAGAGCCTGAGAGTGGTCTTAC--AACTGAGGATGGACA 120
** ** *** * * *** *** * * * ** * * * ** **
consensus_5238#0 CCAGGCCGCCACCGTTCGCCATGGTCCCGGCGGTGTCCGAGGCCGTCCTCGCGGTGTTCG 300
consensus_5238#1 GTATGATGGATGGGATGATCAACAATCTGCAGGTG---GGAGCAGTAACTGGAATTCTCG 177
* * * * * ** * * **** * ** ** * * ***
consensus_5238#0 ACGTCTCCACCACGCTCCGCTCGCAGGGGTACCTCGCCGGGCAGGAGCTGCCCAGCATCA 360
consensus_5238#1 TGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGA--AGCCTTCATTA 235
* * * ** **** * ** ** * ** ** *** *
consensus_5238#0 CCCTCCCCGAGGACCGCGCCCCGGAGGTGTTCGAGCGGCTGCTCGGGTCCTTCCTCGCGC 420
consensus_5238#1 CCTTAT--GAAGATC------CAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAAC-- 285
** * ** ** * * ** ** * ** * * * * * *
consensus_5238#0 AGTCGCATGGGCCCGGCGTGCTCCCGCCGCGCCCCATGCCTCCCCTGCTCGGGGACGGCA 480
consensus_5238#1 --TCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACA-AGTG 342
** * * * * ** * * * * * * * *
consensus_5238#0 CCCCCGTGGGGCTGCTCCGCCTGTACCTCGCCGTCAGGG--CGTGCGGCGGGTTCGAGGC 538
consensus_5238#1 CAACTGTGAAGTCCCAGGTTCCACTTCTTGT-GTCAGATTTCATGTGGCAGA---GAAAA 398
* * *** * * * ** * ***** * ** *** * **
consensus_5238#0 CGTGCGTTCGTGGGCGGCCGCCGCCGAGATGGCCGGCCTCAACCCCGCCATGGACGTCCC 598
consensus_5238#1 AGACCGAGCTGAAGCG--------TGAAATGGGCTCATCATACTATGCAATGAAGTT--- 447
* ** * *** ** **** * ** ** *** * *
consensus_5238#0 CATCATGCTGGTGTACCACAAGTACCTCTGCCCCCTGGAGGCGAGCTTCCTCAGGGCCCA 658
consensus_5238#1 --TGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGA------TGAAGAAAAG 499
* *** ** ** * * * * * * * ** * * *
consensus_5238#0 GAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTTCCTCGC 718
consensus_5238#1 AAGTTTGAGACCATTGTCCAGCAGAATCTGC-----CTTCATCTAAGTACAATTTCTGGG 554
* **** * ** * ** * * ** * ** * * * ** ** *
consensus_5238#0 GCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGA 778
consensus_5238#1 ACAAGCTGC--GTGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAA 612
* ** ** * * **** * * * * * * * *** * * * *
consensus_5238#0 GAACCTCGTGGGGATGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCG 838
consensus_5238#1 CAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAG------AATCGAGTAGCTCAACATGC 666
** * * * ** ** * * **** ** ** ** * *
consensus_5238#0 CTCCGGCAGGAACGCCGCCGACAACCACCTCTCCATGGCGTTGATGTTCCGCCGCCAGAT 898
consensus_5238#1 TAATGGTGTAGATAGTGATGATGA------CTCAATTGAACCTGCCTTCCTACGCC---- 716
** * * ** * *** ** * **** ****
consensus_5238#0 GTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGC 958
consensus_5238#1 -TTCGTCAA-GACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAA-- 772
****** * ***** * * ** * ** ** ** * * *
consensus_5238#0 AACAGAGCCTGAGGTGAT-GTGACAATCAAGCAGAAAGAGGT---AAACAAGA---AACT 1011
consensus_5238#1 AATCAGTCTTAGGGTGATAGTCTTCTATAAGTAACTGGTGGCTCCAGTTCAGCTTCACCT 832
** * * ****** ** *** * * ** * ** * **
consensus_5238#0 ACATTACAAAACTTGGAATCGCAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTA 1071
consensus_5238#1 GGAGCTCAAGACTCAAAAGGTTCATT-TATTTTTATCTTCACCAATTGGTTACTGGACTG 891
* *** *** ** *** * * ** * * * * ** * * *
consensus_5238#0 TTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTA-TGAGACTCGGTC-TATTGCACTT 1129
consensus_5238#1 GAGACGGTAAGTGAGCTTCAAT---TGGGAATCTCACTGAGACTTGGTGGTGGTTTTTGT 948
* * ** *** * * ** ** * * ******* *** * * *
consensus_5238#0 GATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGT------ 1183
consensus_5238#1 GAATACCTCTGTGTGGCGCGTTGCCCGTTTACCTTAAAATCTCAATGCAACTGGGGTTGA 1008
** * * * *** * * ** * *** * * * *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||